Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01926 ATGACAAAACCTGCTTATGTTGTTGTTTATGTCTTTCTTATTTGCGCTATGGCCAATGGGGGTTCAGAGGGAAAGAGATGGAAACATGAAGATTTTCATGCCGATCATCGTGGAGAAAAGGCAGAGCAGGTGTGGAGACATTGTAGAAAAGAAATGATAGAGAAGAGTTATGGCATCAAAGAATTTGACTTGCATTTATTAGATGAGACGAGGAGAAAGAGATCGAAATATCTACCTCCCTGTATGAAACAACACTTTTTGGATTGCTTAAGAAACAGAAATTATCCTATTCCTGTTTCGGAACAGGAAGGACATTTCTTGAAGAAGCATTATGAGTCACTCTTTGGTTTAGCAGATGGACATAGATATTTACTTTCAGAATCACCGCATAACCAGACACCACCGAGCCCTGATTCCGTTCCGTCATCTGGATCATCACCAAAACTGAAAAGTCATATTGCAGCACAAACTACTTCTTCACCTCCAACTCCTGAGCTTTCGTATCATGATTTCACACTCCCTCCGAACGTGTTTGTGCCATTTTTACCACCACGTCCTCCTCCTCCTCCTTCTCCTCCTCCCCCTACTCCTCCTCCTCCTCCTGCTCTTGCTGCGTTTGATCAGAAAGAAATTATCATTGCTGCAGTTGCTTCAGGAATTATAATCTTAATCGGCTTGTTCTTATGTTTCCGCGAGATGAGGAAGAGAAAAAAAGTTGACAAAGATGTCAGGCCTTTACTCATATTAAGCTCAAGTAGTTCACAAAAGTCTATGAGTTTCGAAAATAATGATATGAAAGAATATGGTATTAACTACGGAATGAATCCTTCTACTGTTAGGAACTCGTCCAATAAGCATGAAGTCAACAATGCCTCACTGGCTGAGATAACATCATCAGATAATATAGGACAAGTACCAGTATCTCCAATAAAACATCTTCCAGGAAGATCAGCCCCTGAGGCTTCACCACCGCCGCCTCCACCACCTTCTCTTGCACCTCACCCTCCACCTCCTCCAAAAATGGCTCGGGCTCCACCTGCTCCTCCCAAACCATTGGAAGGTCGAAACCTTAAATCACCTCTAGGACCACTTGGTACTAAGGATGATGAAGAGTCTGATACCCCAAAACCGAAATTAAAGCCATTTTTCTGGGATAAGGTTGCAGCAAATCCTGATCAAGCCATGGTCTGGCATGAGATCAGATCAGGGTCATTCCAGTTCAGTGAAGAAAAGATAGAGTCTTTATTTGGCTGCGCAAACCAGAACAGAAAAAAAGATTCTCCATCTTTAGATCCTTCTGTCCAGTACATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGTGCTTTGAATGTGAGCACAAAAGAAGTTATTGACGCCCTTAAAGAAGGTAATGAGATTCCTGTTGAGCTCATCCAAACAGTATTGAAGATGGCGCCAACAACAGATGAGGAATTGAAGCTAAGGTTATTCACGGGAGACGTTTCCCGACTTGGCCCTGCAGAGAAGTTTCTCAAGGCCTTGGTTGATATTCCATTGGCTTTCAAACGTCTCGAGTCACTACTGTTCATGTTTACACTTCCGGATGAGGCTTCAAGCATTAAGGAATGCTTTACAATATTAGATGTTTCTTGCAACAAACTAAGGAAAAGCAGGCTTTTCCAAAAGCTATTAGAAGCAGTTCTAAAGACTGGAAACCGATTGAACACTGGAACCTATCGCGGTGATGCTCAAGCATTTAGGCTCGACACACTTTTGAAACTCGCGGATGTAAAAGGAACAGACGGTAATACCACACTGTTACACTTTGTGGTTCATGAGATCATTCGTTCAGAAGGCATAAGAGCTGTAAGAACGGAAAAGGCAAGCCAAAGCCATTCTAGTATGAAAACTGAGGATTTCATCACTGAATCAAATGGGGAATCAGAAGAGCACTATCGCGGCCTTGGCCTTCAAGTTGTTTCAGGTCTAATTACTGAATTAGAAGATGTGAAAAAGGCAGCGGTGATAGATGGTGATGCTCTAACATCTGCAGTGTTGAAACTTTATAATACATTGGTAAAATCTGAAGAACTGTTGAATACGGGTCTGAAGAATCTAGAAGAAGATAGCGAGTTTCAACATTCCCTTGCAAATTTTGTGGAGAAGGCAAGAGAGGAAGTGGTATGGTTGATAGGGGAAGAGAAGAGGATAACGACCGGGGTTAAGAGTACTGCAGATTATTTTCATGGGAATGCCGGAAGAGATGAAGGGTTGCGTTTGTTTGTGGTTGTACGTGATTTCTTGGTAATGTTGGACAAGGTGTGCAATGAGGTAAAAGCATCAACAATGAAGACAGTAGCTGCCAAAGATTCTCCTTCTAGCAAGAAAGAGGCTCCTTCGTCCTCTCCAGATATTCATCAACAATCACTCTCTGATATGCATAGGAGACTATTTCCAGCCATAGCAGAGAGGAGAATGCATGACTCCAGTTCTTCCTCGTCCTCCTCCGATGATGATGATCATGAGATGTTACCAACGTAG 2538 0.4224 MTKPAYVVVYVFLICAMANGGSEGKRWKHEDFHADHRGEKAEQVWRHCRKEMIEKSYGIKEFDLHLLDETRRKRSKYLPPCMKQHFLDCLRNRNYPIPVSEQEGHFLKKHYESLFGLADGHRYLLSESPHNQTPPSPDSVPSSGSSPKLKSHIAAQTTSSPPTPELSYHDFTLPPNVFVPFLPPRPPPPPSPPPPTPPPPPALAAFDQKEIIIAAVASGIIILIGLFLCFREMRKRKKVDKDVRPLLILSSSSSQKSMSFENNDMKEYGINYGMNPSTVRNSSNKHEVNNASLAEITSSDNIGQVPVSPIKHLPGRSAPEASPPPPPPPSLAPHPPPPPKMARAPPAPPKPLEGRNLKSPLGPLGTKDDEESDTPKPKLKPFFWDKVAANPDQAMVWHEIRSGSFQFSEEKIESLFGCANQNRKKDSPSLDPSVQYIQIIDPKKAQNLSILLRALNVSTKEVIDALKEGNEIPVELIQTVLKMAPTTDEELKLRLFTGDVSRLGPAEKFLKALVDIPLAFKRLESLLFMFTLPDEASSIKECFTILDVSCNKLRKSRLFQKLLEAVLKTGNRLNTGTYRGDAQAFRLDTLLKLADVKGTDGNTTLLHFVVHEIIRSEGIRAVRTEKASQSHSSMKTEDFITESNGESEEHYRGLGLQVVSGLITELEDVKKAAVIDGDALTSAVLKLYNTLVKSEELLNTGLKNLEEDSEFQHSLANFVEKAREEVVWLIGEEKRITTGVKSTADYFHGNAGRDEGLRLFVVVRDFLVMLDKVCNEVKASTMKTVAAKDSPSSKKEAPSSSPDIHQQSLSDMHRRLFPAIAERRMHDSSSSSSSSDDDDHEMLPT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01926 845 MobiDBLite consensus disorder prediction 829 845 - -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 294 379 - -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 783 845 - -
Vifa1g01926 845 PANTHER FORMIN-RELATED 211 827 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa1g01926 845 MobiDBLite consensus disorder prediction 179 203 - -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 318 353 - -
Vifa1g01926 845 ProSiteProfiles Formin homology-2 (FH2) domain profile. 369 796 IPR015425 -
Vifa1g01926 845 Pfam Formin Homology 2 Domain 371 770 IPR015425 -
Vifa1g01926 845 Gene3D Formin, FH2 domain 375 804 IPR042201 -
Vifa1g01926 845 SMART it6_source 369 785 IPR015425 -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 785 807 - -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 125 167 - -
Vifa1g01926 845 SUPERFAMILY Formin homology 2 domain (FH2 domain) 324 782 - -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 364 379 - -
Vifa1g01926 845 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01926 Vifa-Chr1 312526638 312531198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01926 352 825 FH2 protein (formin) Gene Family AT5G54650 56.487 5.94e-174 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01926 - - psat:127086789 1210.28