Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01925 ATGACAAAACCTGCTTATGTTGTTGTTTATGTCTTTCTTATTTGCGCTATGGCCAATGGGGGTTCAGAGGGAAAGAGATGGAAACATGAAGATTTTCATGCCGATCATCGTGGAGAAAAGGCAGAGCAGGTGTGGAGACATTGTAGAAAAGAAATGATAGAGAAGAGTTATGGCATCAAAGAATTTGACTTGCATTTATTAGATGAGACGAGGAGAAAGAGATCGAAATATCTACCTCCCTGTATGAAACAACACTTTTTGGATTGCTTAAGAAACAGAAATTATCCTATTCCTGTTTCGGAACAGGAAGGACATTTCTTGAAGAAGCATTATGAGTCACTCTTTGGTTTAGCAGATGGACATAGATATTTACTTTCAGAATCACCGCATAACCAGACACCACCGAGCCCTGATTCCGTTCCGTCATCTGGATCATCACCAAAACTGAAAAGTCATATTGCAGCACAAACTACTTCTTCACCTCCAACTCCTGAGCTTTCGTATCATGATTTCACACTCCCTCCGAACGTGTTTGTGCCATTTTTACCACCACGTCCTCCTCCTCCTCCTTCTCCTCCTCCCCCTACTCCTCCTCCTCCTCCTGCTCTTGCTGCGTTTGATCAGAAAGAAATTATCATTGCTGCAGTTGCTTCAGGAATTATAATCTTAATCGGCTTGTTCTTATGTTTCCGCGAGATGAGGAAGAGAAAAAAAGTTGACAAAGATGTCAGGCCTTTACTCATATTAAGCTCAAGTGAGATGTCTGGTGGTAGTTCACAAAAGTCTATGAGTTTCGAAAATAATGATATGAAAGAATATGGTATTAACTACGGAATGAATCCTTCTACTGTTAGGAACTCGTCCAATAAGCATGAAGTCAACAATGCCTCACTGGCTGAGATAACATCATCAGATAATATAGGACAAGTACCAGTATCTCCAATAAAACATCTTCCAGGAAGATCAGCCCCTGAGGCTTCACCACCGCCGCCTCCACCACCTTCTCTTGCACCTCACCCTCCACCTCCTCCAAAAATGGCTCGGGCTCCACCTGCTCCTCCCAAACCATTGGAAGGTCGAAACCTTAAATCACCTCTAGGACCACTTGGTACTAAGGATGATGAAGAGTCTGATACCCCAAAACCGAAATTAAAGCCATTTTTCTGGGATAAGGTTGCAGCAAATCCTGATCAAGCCATGGTCTGGCATGAGATCAGATCAGGGTCATTCCAGTTCAGTGAAGAAAAGATAGAGTCTTTATTTGGCTGCGCAAACCAGAACAGAAAAAAAGATTCTCCATCTTTAGATCCTTCTGTCCAGTACATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGTGCTTTGAATGTGAGCACAAAAGAAGTTATTGACGCCCTTAAAGAAGGTAATGAGATTCCTGTTGAGCTCATCCAAACAGTATTGAAGATGGCGCCAACAACAGATGAGGAATTGAAGCTAAGGTTATTCACGGGAGACGTTTCCCGACTTGGCCCTGCAGAGAAGTTTCTCAAGGCCTTGGTTGATATTCCATTGGCTTTCAAACGTCTCGAGTCACTACTGTTCATGTTTACACTTCCGGATGAGGCTTCAAGCATTAAGGAATGCTTTACAATATTAGATGTTTCTTGCAACAAACTAAGGAAAAGCAGGCTTTTCCAAAAGCTATTAGAAGCAGTTCTAAAGACTGGAAACCGATTGAACACTGGAACCTATCGCGGTGATGCTCAAGCATTTAGGCTCGACACACTTTTGAAACTCGCGGATGTAAAAGGAACAGACGGTAATACCACACTGTTACACTTTGTGGTTCATGAGATCATTCGTTCAGAAGGCATAAGAGCTGTAAGAACGGAAAAGGCAAGCCAAAGCCATTCTAGTATGAAAACTGAGGATTTCATCACTGAATCAAATGGGGAATCAGAAGAGCACTATCGCGGCCTTGGCCTTCAAGTTGTTTCAGGTCTAATTACTGAATTAGAAGATGTGAAAAAGGCAGCGGTGATAGATGGTGATGCTCTAACATCTGCAGTGTTGAAACTTTATAATACATTGGTAAAATCTGAAGAACTGTTGAATACGGGTCTGAAGAATCTAGAAGAAGATAGCGAGTTTCAACATTCCCTTGCAAATTTTGTGGAGAAGGCAAGAGAGGAAGTGGTATGGTTGATAGGGGAAGAGAAGAGGATAACGACCGGGGTTAAGAGTACTGCAGATTATTTTCATGGGAATGCCGGAAGAGATGAAGGGTTGCGTTTGTTTGTGGTTGTACGTGATTTCTTGGTAATGTTGGACAAGGTGTGCAATGAGGTAAAAGCATCAACAATGAAGACAGTAGCTGCCAAAGATTCTCCTTCTAGCAAGAAAGAGGCTCCTTCGTCCTCTCCAGATATTCATCAACAATCACTCTCTGATATGCATAGGAGACTATTTCCAGCCATAGCAGAGAGGAGAATGCATGACTCCAGTTCTTCCTCGTCCTCCTCCGATGATGATGATCATGAGATGTTACCAACGTAG 2553 0.423 MTKPAYVVVYVFLICAMANGGSEGKRWKHEDFHADHRGEKAEQVWRHCRKEMIEKSYGIKEFDLHLLDETRRKRSKYLPPCMKQHFLDCLRNRNYPIPVSEQEGHFLKKHYESLFGLADGHRYLLSESPHNQTPPSPDSVPSSGSSPKLKSHIAAQTTSSPPTPELSYHDFTLPPNVFVPFLPPRPPPPPSPPPPTPPPPPALAAFDQKEIIIAAVASGIIILIGLFLCFREMRKRKKVDKDVRPLLILSSSEMSGGSSQKSMSFENNDMKEYGINYGMNPSTVRNSSNKHEVNNASLAEITSSDNIGQVPVSPIKHLPGRSAPEASPPPPPPPSLAPHPPPPPKMARAPPAPPKPLEGRNLKSPLGPLGTKDDEESDTPKPKLKPFFWDKVAANPDQAMVWHEIRSGSFQFSEEKIESLFGCANQNRKKDSPSLDPSVQYIQIIDPKKAQNLSILLRALNVSTKEVIDALKEGNEIPVELIQTVLKMAPTTDEELKLRLFTGDVSRLGPAEKFLKALVDIPLAFKRLESLLFMFTLPDEASSIKECFTILDVSCNKLRKSRLFQKLLEAVLKTGNRLNTGTYRGDAQAFRLDTLLKLADVKGTDGNTTLLHFVVHEIIRSEGIRAVRTEKASQSHSSMKTEDFITESNGESEEHYRGLGLQVVSGLITELEDVKKAAVIDGDALTSAVLKLYNTLVKSEELLNTGLKNLEEDSEFQHSLANFVEKAREEVVWLIGEEKRITTGVKSTADYFHGNAGRDEGLRLFVVVRDFLVMLDKVCNEVKASTMKTVAAKDSPSSKKEAPSSSPDIHQQSLSDMHRRLFPAIAERRMHDSSSSSSSSDDDDHEMLPT 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01925 850 SMART it6_source 374 790 IPR015425 -
Vifa1g01925 850 PANTHER FORMIN-RELATED 211 832 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa1g01925 850 MobiDBLite consensus disorder prediction 790 812 - -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 179 203 - -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 299 384 - -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 369 384 - -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 834 850 - -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 788 850 - -
Vifa1g01925 850 Pfam Formin Homology 2 Domain 376 775 IPR015425 -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 323 358 - -
Vifa1g01925 850 ProSiteProfiles Formin homology-2 (FH2) domain profile. 374 801 IPR015425 -
Vifa1g01925 850 SUPERFAMILY Formin homology 2 domain (FH2 domain) 329 787 - -
Vifa1g01925 850 Gene3D Formin, FH2 domain 380 809 IPR042201 -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 125 167 - -
Vifa1g01925 850 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01925 Vifa-Chr1 312526638 312531198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01925 310 830 FH2 protein (formin) Gene Family AT5G54650 54.234 3.44e-172 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01925 - - psat:127086789 1222.61