Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01923 ATGGACCCAATGTTTCCCCGCGACACCTCCTCCCCCGCCATAGACCCAATGTTCTCCCCCTTCACCCTTCAATCTCTTCTCACTTTCAACCCTTCCTTCTTCACTGACACTTTTCACACCATAACAGACGAACCTCAACTCCCTAACCTCCCTCAATCTGCCGCCGACCAAACTCCATACCTTAACAACAAAAACAAAAATGCCCTTGTAGTCCGAAAAACCGAACACCCTCTTAATCTCCCTCCATTACAAGAATATCTCCCATTTCAACAACAAGCCTTCAACTTCTTCCCCCAGTACTGCCCACCCTTCGAAGCTTTTCATCACCTCCCTCAACTCCATTCCCTTGAACACTCTAACACAAAACGCCTCCGCCACCTTTTCACAGAGGAAACAACTCCACCACAACAGAAACAACCTCACTTTGTTCGTGTAAAATCTCCTTCTTTGATTCCTCAGAGCAAATTAGCAAGACAGAGAAGACAAACGCTAAGCGAGAAAACACGCTGTTTGCAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACCCTTTTCGAAGAAGCTTACAAATATGTTAAGTTCTTGCAAGCACAGGTCTCTGCCCTTCAATCAATGCCTTTTCATTCAACCACCACCACCTACAGTGGCGGCGGCGGTGATGATAGTGTTTGTGGTGACTTGAAGGGTCTAAACAGAAAGCAGGCTTTGCAGGTTGTGGTGAACTCACCGGTAGCACAAACAAAGCTTTATTCACAAGGGTACTGTGTTTTCTCAATGGAACAAATCTCTTTGCTCAGAAAATTATCAGAGAGAAGACAACAACAGCAGCAGAATATGTCTGATAATGCTTCTTCCAACACTTTCTTTCAGTAA 879 0.4482 MDPMFPRDTSSPAIDPMFSPFTLQSLLTFNPSFFTDTFHTITDEPQLPNLPQSAADQTPYLNNKNKNALVVRKTEHPLNLPPLQEYLPFQQQAFNFFPQYCPPFEAFHHLPQLHSLEHSNTKRLRHLFTEETTPPQQKQPHFVRVKSPSLIPQSKLARQRRQTLSEKTRCLQKLMPWDKKMDQATLFEEAYKYVKFLQAQVSALQSMPFHSTTTTYSGGGGDDSVCGDLKGLNRKQALQVVVNSPVAQTKLYSQGYCVFSMEQISLLRKLSERRQQQQQNMSDNASSNTFFQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01923 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Vifa1g01923 292 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 134 268 IPR045843 GO:0003700|GO:0006355
Vifa1g01923 292 SMART finulus 154 203 IPR011598 GO:0046983
Vifa1g01923 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 207 IPR036638 GO:0046983
Vifa1g01923 292 Gene3D - 152 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01923 Vifa-Chr1 312350861 312351739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01923 160 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.536 3.01e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01923 - - psat:127082276 473.396