Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01922 ATGGACCCAATGTTTCCCGGCGACACCTCCTCCCCCGCCATAGACCCAATGTTCTCCGCCTTCACCCTTCAATCTCTTCTCACTTTCAACCCTTCCTTCTTCACTGACACTTTTCACACCATAACAGACGAACCTCAACTCCCTAACCTGCCTCAATCTGCCGCCGACCAAACTCCATACCTTAACAACAAAAACAAAAATGCCCTTGTAGTCCGAAAAACCGAACACCCTCTTAATCTCCCTCCATTACAAGAATATCTCCCACTTCAACAACAAGCCTTCAACTTCTTCCCCCAGTACTACCCACCCTTCGAAGCTTTTCATCACCTCCCTCAACTCCATTCCCTTGAACACTCTAACACAAAACGCCTCCGCCACCTTTTCACAGAGGAAACAACTCCACCACAACAGAAACAACCTCACTTTGTTCGTGGAAAATCTCCTTCTTTGATTCCTCAGAGCAAATTAGCAAGACAGAGAAGACAAACGCTAAGCGAGAAAACACGCTGTTTGCAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACCCTTTTCGAAGAAGCTTACAAATATGTTAAGTTCTTCAACCTATCCCTTCTTTGCTTCGCCTAA 618 0.4547 MDPMFPGDTSSPAIDPMFSAFTLQSLLTFNPSFFTDTFHTITDEPQLPNLPQSAADQTPYLNNKNKNALVVRKTEHPLNLPPLQEYLPLQQQAFNFFPQYYPPFEAFHHLPQLHSLEHSNTKRLRHLFTEETTPPQQKQPHFVRGKSPSLIPQSKLARQRRQTLSEKTRCLQKLMPWDKKMDQATLFEEAYKYVKFFNLSLLCFA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01922 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 197 IPR036638 GO:0046983
Vifa1g01922 205 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 134 196 IPR045843 GO:0003700|GO:0006355
Vifa1g01922 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01922 Vifa-Chr1 312292894 312293511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01922 152 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 45.652 1.06e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01922 - - psat:127083335 339.347