Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01919 ATGTTCTCCACCTTTAGCCTCCGATCCCTTCTCACTTTCGATCCTTCCTTCTTTACCGACAGTTTTCACACCTTAATCGACCACCCTCAACTCCCTAACCTCCCGCAATCTGCCACCGACCAAACTCCATACCTCAACGACAACAAAGATCTCCTCAAAGTCCCCAAAACCGAATGCCCTCTTAATCTTCCTCCACTAGAAGAATATCTCCCACTTCAACAACAACCCTTCAACTTCCTCCCCCAATCCTACCCACCTTTTCAAACTTTTCACCGTCTCCCTCAACTCCTTTCCCCTCCACACTCTAACACAAAACGCCTCCGCCACCTTTTCACCGAGGAAACAACTCCACCACAACAGAAACAACCTCACTCTGTTCGTGGAAAATCTCCTTCTTTGATTCCTCAGAGAAAATTAGCAAGACAGAGAAGACAAACTCTAAGCGAGAAAACACGTTGTTTGCAGAAACTAATATCATGGGATAAGAAAATGGATCAAGCTACTCTTTTTGAAGAAGCTTACAAATATGTTCGGTTTTTGCAGGCACGAATCTCTGCTCTTCAATCAATGCCTTCTCATTCAACCACCACCACCACCTACAGCGGCGGCGGCAATGGTGTTTTTGGTGAGTTGAAGAAGCTGAACAGAAAGCAGGCTTTGCAGGGGTTGCACAAACAAAGCTTTGTTCACGGGGTTACTGTGTTTACTCCATGGAATAAATCTCTGTGCTCAGAAAATCTTCAGAGAAAAGACAACAAACAGCAGCAGAAGAATATGTCTGATAATGGTTCTACTTCCGACACTTTCTTTCACTAA 816 0.4461 MFSTFSLRSLLTFDPSFFTDSFHTLIDHPQLPNLPQSATDQTPYLNDNKDLLKVPKTECPLNLPPLEEYLPLQQQPFNFLPQSYPPFQTFHRLPQLLSPPHSNTKRLRHLFTEETTPPQQKQPHSVRGKSPSLIPQRKLARQRRQTLSEKTRCLQKLISWDKKMDQATLFEEAYKYVRFLQARISALQSMPSHSTTTTTYSGGGNGVFGELKKLNRKQALQGLHKQSFVHGVTVFTPWNKSLCSENLQRKDNKQQQKNMSDNGSTSDTFFH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01919 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 193 IPR036638 GO:0046983
Vifa1g01919 271 Gene3D - 136 199 IPR036638 GO:0046983
Vifa1g01919 271 MobiDBLite consensus disorder prediction 113 146 - -
Vifa1g01919 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Vifa1g01919 271 SMART finulus 137 186 IPR011598 GO:0046983
Vifa1g01919 271 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 248 IPR045843 GO:0003700|GO:0006355
Vifa1g01919 271 MobiDBLite consensus disorder prediction 248 271 - -
Vifa1g01919 271 MobiDBLite consensus disorder prediction 113 129 - -
Vifa1g01919 271 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01919 Vifa-Chr1 311436433 311437248 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01919 143 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 41.975 6.25e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01919 - - psat:127082276 342.043