Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01918 ATGGGCGATGGAGGTGTCTTATGCATGCCTTTGCAGTATAATATGGAGAGGTTATCGAGTTCAGAGAAAACGCATTGCGGAGGCAATAGTGGGAATGTCTTCAACTTCAAGTTGCTCAAGAATATGAAATCGAGAAAGAGTGAATTAGCATTGGATAGAGTGGATAAGAGAAGTGGAAGTGATGTTGAGAATGATGAAATGGTATGTGGTGATAAGGTGCAGAAGGAAGAAGTTGAAGAGGGTGAGTTGATTGCTTTGAAGTGGCCTAGAAGTGAAGTTGAAATAGAAAATGGAGAGTTTCTGCCGGAAATAAATATGTCGTTGAGACGAAGTGAGGATGAGAACGAGGAGATTGTTAGTGATAGATGGAAAGCAAGGGAGTTTGAGAAGGGAGAATTTCATCATGGGAAATGGAGAAGAGACGATGTGGAAAGAGGGGAGATAGTTCATGAGAAGGCTAGGAGAGGAGAAAATGAATATGGTGGACCATGGAGAGGTGTGAAAGATGATGTTGAGAGAGGAGAGTTTATTCCAAATAGATGGCATAATGGATCAATTGGGAAGAATGATTATGGTAACAGCAGTAACCGCAGAAATTATTCAGGTAAGGACAAAGTTTGTAAATTTCAACGTGATCGTACACCACCTTCTTGGAGATATACAGGTGAAGATTCTATTAGGAAGAAAGAATTTATTAATAGAAGTGGGAATCAGCATGCTAAAATTTCTCCCAGGTGGGAGAATGCCCAGCAGAGGAATATAAGGAACGGTTCAAAGATTGTAGATGACGAGAAAAATGCATATAGCAATGGTAAGGATCATACACGAGATTACTCTTCTGGAAGTCGCTTGAAGAGGCTCGGTAATGATTTTGACAGCTATGAGCGGAAGCATTCTGCAGATTTTACAAGTTCAAAAAGTAGAAAGCTTTCTGATGATAGCTATCCTTATTCAGAGAGCTATTCTCGTCGCCCTGCGGAGCAGTCTTATAGAAATAATAATTCTACCAAACTTTCTTCAGAAAAGTATTCTTCTAGGAATCATGAATCTTCTTTTTCTACCAGACCAGCTTATGACAGACATGAACGCAGCCCTGTTCATTCTGAGTGGTCCCCACATGACCGAAGTAGGTATTACGATCATAGAGAGCGCACTTCAGTGCGCCGATCGCCCTTTAGTCGTGAGAGATCTCCATATAGCCGGGAGAAATCCCCCCATGGTCGGGAGAGGTCCCCATATATGAGGAGCTGGGACAGAAGTCGACAGCATGATCATAAATTGAGAAGTCCAGCACCACGCGTCGAGCAGTTGCCACAAGATCAAGGTCGGCGTCATGATCACAGGGACTGTACTCCAAATTTAGTAGAAGGATCCCCCCTTGATCAAACTAGGAAGGATGTTCATGATGAAACAAGTTGCAAGAACTCATCATGTGATAAGCAGAATTCCCCAAATAGTTGTCAGAGTGATGAAGATAAACTCATTCAGAAGGAGTTGGATTTTTCAGTTGCAGAATCTCGAGGTGAAAGAAACATGCAAAAGACTGACGAGTCAATTGAGAAAGATATTAGTGATAGTCAACCCGTTGAGGAACAGAAGTCCTGTAGTCCAACTATTGATCCGAAAGAATCTCCACACCTTGAGCCACAACCACCTCCAGATGAGCTGCCTTCAATGGAAGAAGATATGGACATTTGTGATACCCCTCCTCATGTCCCTGTGGTGACAGATTTGTCGTCAGGAAAATGGTTTTACCTTGATTATGGAGGTGTAGAAAATGGGCCTTCCAAATTGTGTGACATTAAGCTCCTTGTTGATGAAGGGGTACTAATGTCAGATCATTTTGTCAAGCACTTGGATAGTGACAGATGGCTAACAGTTGAAAATGCAGTGTCGCCATTGGCTGCTCTGAGTTTCCCGTCTATTGTGTCAGATACAATAACTCAGCTTGTAAATCCTCCAGAGGCTTCTGGTAATATTTTGGCCGATGCTGCAGATATTCAATCTGGTCCTGAGAATTATCTAGAAAAGCCGGGGCCCTCGCTGCTGCCACACGGACAACCTAGCGAGAGTGTGCTTACATCTGAACTTTTGGACAACTTCTATATTGATGAAAGAGTTCAAAATCTGTTAGAGGGTTATGATGTCACTCCTGGGTTGGAACTTGAGGCAGTAAAAGAAGCTTTGCAATTGAAGTTTGAATATGCAAAGGAAGATGGATTAGGAGACTATGAAGGTTTTCCTTCGCATGTTTCCCGCCCTAGGGAAGATTGTGATTCAAGTACTTATTTAGCAACAAGAGATTCTGAATCTCAGTTAAGTATAGACAACATGGATAATGGGTTTGGCATTCCTAAGGATTGGTTTTCTACCCATTGGCCATGCAAAGGTGGTGACTGGAAGAGGAATGATGATGCCCACGTTCGATGTTCTAGGAAAAAACTTGTTCTAAATAATGGTTTTCTGTTGTGCCAAATGCCGAAGTCTGGATGTGAAGATCCTCGATGGCCTGAAAAAGATGACTTGTATTTTCCTTCTCAAACCAGGAGGCTTGATCTCCCTTTGTGGGCTGTTGGTGCTGATGAGTGGGTTGATTGCAATGCTGCAAGCAAGTCTATTCAAAGTAAGCCTTCTTCTGTCAAAGGAATGAAAGGAAATGTTCTTTCGGTGGTAAGGATAAATGCATGCGTTGTCAATGATCAGGGATTGCTGCTCACTGAGTCACGCCACCAGACCCGAGGCAAGGATAGACAACATCCAAGGTCAGCTTGGCCATTCACTTCAACCTGTGATAGTAAGAGATCATCAACTGAAGACGATTCTCAGTCAAAATCAGTTAGTGATCAAGGTTCTTACCAAAGCATGGAGTCCATTAGTGTCCCTAAAGACCATGTCTGTACTATCCAGGAGTTGCAGCTACATTTGGGTGACTGGTATTACATTGATGGTTCTGGACGTGAGAAAGGGCCTTCATCATTTTCAGAGCTACAACATTTAGCAGATCAAGGAATTGTAAAAAGGCATAGCAGTGTGTTTAGGAAACATGATAAACTCTGGGTTCCTATTACATCTACCGCAGAAACTACAGATGTCTGTTTCACAAGCCACCAAAAAAGCAGTTCAACATTGGGTGCATGCTCTGATCATCAATCAGAGCAAACTCAAGGTGTTTCATATGGTGGTGGATCTTACACAAGTTCAAGTATGTTTAACTGGATACACCCTCAGTTTGTTGGTTTTACTCGTGGGAAGCTGCACGAACTGGTTATGAAATCATACAAGAGCCGGGAGTTGGCCGCTGCTATAAATGAGGTTTTAGATCCCTGGATCAATGCAAGACAACCAAAGAAAGATATTGAGAAACAAATATATTGGAAATCAGGCGACATGCGAGCTGCCAAAAGAGCCCGGATGCTGGTTGATGATAGTGAAGAAGACAGTGGTTTGGAAGATGATGTTACCATTGACAAGAATGAACCCACTTTTGAAGATCTATGTGGTGATGCTACTTTTCCTGAAGACGAAATTGGTATCTCTGATTCTGAAGTGGGAAGCTGGGGCTTATTGGATGGTCCGGTATTGGCACGAATTTTTCATTTTTTGAGATCTGATTTTAAGTCCCTTGTATTTGCATCGATGACGTGCAAGCATTGGAGTGCTGCTGTAAGGTTTTACAAGGAAGTTTCAATACAGGCCAATTTGTCATCCTTAGGGCCTTCTTGCACTGATACTGTGTTGTGGAACATTATGAATGCCTATGAGAGAGACAAGATCAATTCAATCATTCTAATGGGGTGTAACAATATTACGGCTGACATACTTGAGAAAATTCTTCTTTCATTTCCTGGTTTATGTACCATAGACATTAGAGGATGCAGCCAGTTTAGAGAGCTAACTCCTAAATTTACCAATGTGAAATGGATCAAGAGCAGAAGTTCACGCATGGATAGAATTACAGAACAAGTTTCATCTACATCCAAACCCAGCAATTTAGGAATAGATGGTTTTGGTCAATTGAAAGAGTATTTTGATAGCGTGGATAAGAGAGATTCGGCAAAGCAGTTATTTCGGCAAAACTTATACAAGCGGTCCAAACTATATGATGCTAGAAGGTCCTCTTCCATTCTATCTAGGGATGCTCGTACAAGACGTTGGGCTATTAAGAAGTCTGAAAGTGGTTTTAAGAAGATGGAGGAATTCCTCGCTTCGAGACTAAAGGAAATCATGAAGTCAAATTCTTGTGACTTCTTTGTACACAAGGTTGCAGAAATTGAGGCTAAAATGAAAAATGGTTATTACAGTAGCCGTGGATTGAGCTCTGTCAAAGAGGACATAAGTAGAATGTGCCGTGATGCAATAAAAGCAAAAAATCGGGGTGATTCTAGTGACATGAATCACATTATCACATTATTTATTCAACTTGCAGCTCGGTTGGAAGTGAGTTCTAAAAATGTGCATGGCAGAGATGTCCTACTGAAGTCATGGGATAGTGACTCGCCAGCAATGTTCTGTTCTACTTCGTCAAAGTATAAAAAAAATAGATTAGTGAAAGAAAGGAAGTACAGGAGTAATGGAAAACATAATATTTTGGATAATGTAGAGTATACCTCTGATAGAGATATTAGGAGGCGCTTATCAAAGTTGAATAAGAAATCCATGGGCTCCGACAGTGAAACATCTGATGATCTTGATCGGTCTTTTGATGATGACAAGAGTGACAGTGATACTACGTCAACTCAGTCTGAAAGTGACCATGAAGTACGCTCACAAATTTTGATTAGGGAACCAAGAGGGGATGGATGTTTCTCACCTGAGGAAGAGTCGGGTTTCATAACTGATGACCGAGAGTGGGGTGCTCGCATGACAAAAGCAAGTCTGGTTCCTCCAGTTACCAGGAAATATGAAGTCATTGATCATTATTGCATTGTAGCTGATGAGGAGGAGGTGCGGAGGAAGATGCGGGTTTCATTACCAGATGATTATGCAGAGAAGCTGAGTGCACAAAAGAATGGCATAGAGGAGTCAGATATGGAGCTTCCTGAAGTCAAAGATTTCAAACCTAGAAAGCAGCTTGGAAATGAGGTTATTGAGCAAGAGGTTTATGGAATCGATCCTTATACACACAACCTTTTGCTTGATTCTATGCCAGGGGATTTAGATTGGTCTCTGCAAGAGAAGCATTTGTTTATAGAAGACGTGCTCCTTCAAACATTGAATAAGCATGTTAGGAGCTCTACTGGAACTGGAAATACTCCAATGAGCTACCCTTTGCAGCCTGTTATTGACGATATTAGAAGATGCGCCGAAGAAGATTGTGATGCAAGAATGATTAGAATGTGTCAAGGTATTCTAAAGGCCATAGACAGTCGTCCAGATGACAAATATGTAGCTTATAGAAAGGGGCTTGGTGTTGTTTGCAACAAGGAAGAAGGCTTCTGTCAAGATGATTTTGTTGTGGAGTTTTTGGGAGAGGTTTATCCTGTGTGGAAGTGGTTTGAGAAACAAGATGGGATTCGATCTCTGCAGAAAGATAGTACAGATCCAGCACCAGAGTTCTATAACATCTACCTTGAGAGACCAAAGGGTGATGCGGATGGGTATGACTTAGTTGTCGTTGATGCCATGCACAAAGCTAATTATGCCAGTCGAATATGTCATTCTTGCCGACCCAATTGTGAAGCCAAAGTCACCGCTGTTGATGGTCAGTATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTTGATTACAATTCTGTTACTGAGAGCAAGGAGGAGTATGAAGCATCGGTTTGTTTGTGTGGAAGCCAAGTATGCCGCGGGAGCTACTTGAATCTGACTGGTGAAGGGGCGTTTCAAAAGGTTTTGAAGGACTCACATGGAATTCTTGATCGGCATTATTTGATGCTAGAAGCTTGTGAATCAAACTCCGTGTCTGAAGAGGATTATAATGACCTCAGTAGAGCTGGTTTAGGCATTTGTTTGCTTGGGGGCCTGCCAGATTGGCTTATTGCCTATGCAGCCCGCCTTGTGAGATTCATCAATTTTGAAAGAACGAAACTTCCTGAAGAAATTCTAAAGCATAATCTGGAAGAAAAGAGAAAATATTTTTCAGATGTATGTCTTGAAGTTGAAAGGAGTGATGCTGAGGTTCAGGCGGAGGGAGTGTACAACCAAAGACTTCAGAATCTTGCTGTCACTCTCGATAAGGTAAGGTATGTTATGAGATGTATATTTGGTGATCCTCGGAAAGCGCCTCCTCCTATTGAGAAGCTCAGTCCTGAAGCAATTGTTTCGTCTCTCTGGAAAGGAGAGGGCTCATTTGTTGAGGAGCTTCTTCAGTGCATAGCCGCTCATGTGGAAGAAGACATCTTGAATGATCTCAAAGCCAAAATTCATGCCCACGATCCTTCAGGTTCGAAAGATATTCAGAAAGAGCTTCGGAAATCTCTATTATGGTTGAGGGATGAGATCCGAAGTCTTTCTTGTACATATAGATGCCGGCATGATGCTGCTGCTGACTTACTCCATATTTACTCTTATACCAAGCACTTCTTTAGAATACATGAATATCAAACCATTACTTCACCGCCCGTCCATATTAGTCCACTGGACTTAGGCCCCAAGTACACTAACAAGCTGGGAGCAGAGATTCAGGAGTACCGGAAGGTATATGGAAAAAGTTATTGTTTGGGGCAGCTGATCTTTTGGCATAATCAGAGTAATGCAGATCCAGATCATAGCTTGGTTAGAGCAAGCAGGGGGTGTTTGTCTTTACCAGACATCAGTTCCTTTTATACAAAGGCTCAGAAGCCATCACAGAATCGTGTTTATGGTCCAAGGACTGTCAGATCTATGTTGGCAAGAATGGAGAAGCAGCCGCAGAGATCCTGGCCCAAAGACCAGATATGGTTGTATAGAAGTTGTCCAAAATTCTTTGGTAGCCCAATGTTAGATGCTGTAATAAATAACTCTACATTGGACGGAGAGATGGTTCATTGGTTGAGGCACAGACCGGAGGCCGCATGGGACCGTTAA 7056 0.4202 MGDGGVLCMPLQYNMERLSSSEKTHCGGNSGNVFNFKLLKNMKSRKSELALDRVDKRSGSDVENDEMVCGDKVQKEEVEEGELIALKWPRSEVEIENGEFLPEINMSLRRSEDENEEIVSDRWKAREFEKGEFHHGKWRRDDVERGEIVHEKARRGENEYGGPWRGVKDDVERGEFIPNRWHNGSIGKNDYGNSSNRRNYSGKDKVCKFQRDRTPPSWRYTGEDSIRKKEFINRSGNQHAKISPRWENAQQRNIRNGSKIVDDEKNAYSNGKDHTRDYSSGSRLKRLGNDFDSYERKHSADFTSSKSRKLSDDSYPYSESYSRRPAEQSYRNNNSTKLSSEKYSSRNHESSFSTRPAYDRHERSPVHSEWSPHDRSRYYDHRERTSVRRSPFSRERSPYSREKSPHGRERSPYMRSWDRSRQHDHKLRSPAPRVEQLPQDQGRRHDHRDCTPNLVEGSPLDQTRKDVHDETSCKNSSCDKQNSPNSCQSDEDKLIQKELDFSVAESRGERNMQKTDESIEKDISDSQPVEEQKSCSPTIDPKESPHLEPQPPPDELPSMEEDMDICDTPPHVPVVTDLSSGKWFYLDYGGVENGPSKLCDIKLLVDEGVLMSDHFVKHLDSDRWLTVENAVSPLAALSFPSIVSDTITQLVNPPEASGNILADAADIQSGPENYLEKPGPSLLPHGQPSESVLTSELLDNFYIDERVQNLLEGYDVTPGLELEAVKEALQLKFEYAKEDGLGDYEGFPSHVSRPREDCDSSTYLATRDSESQLSIDNMDNGFGIPKDWFSTHWPCKGGDWKRNDDAHVRCSRKKLVLNNGFLLCQMPKSGCEDPRWPEKDDLYFPSQTRRLDLPLWAVGADEWVDCNAASKSIQSKPSSVKGMKGNVLSVVRINACVVNDQGLLLTESRHQTRGKDRQHPRSAWPFTSTCDSKRSSTEDDSQSKSVSDQGSYQSMESISVPKDHVCTIQELQLHLGDWYYIDGSGREKGPSSFSELQHLADQGIVKRHSSVFRKHDKLWVPITSTAETTDVCFTSHQKSSSTLGACSDHQSEQTQGVSYGGGSYTSSSMFNWIHPQFVGFTRGKLHELVMKSYKSRELAAAINEVLDPWINARQPKKDIEKQIYWKSGDMRAAKRARMLVDDSEEDSGLEDDVTIDKNEPTFEDLCGDATFPEDEIGISDSEVGSWGLLDGPVLARIFHFLRSDFKSLVFASMTCKHWSAAVRFYKEVSIQANLSSLGPSCTDTVLWNIMNAYERDKINSIILMGCNNITADILEKILLSFPGLCTIDIRGCSQFRELTPKFTNVKWIKSRSSRMDRITEQVSSTSKPSNLGIDGFGQLKEYFDSVDKRDSAKQLFRQNLYKRSKLYDARRSSSILSRDARTRRWAIKKSESGFKKMEEFLASRLKEIMKSNSCDFFVHKVAEIEAKMKNGYYSSRGLSSVKEDISRMCRDAIKAKNRGDSSDMNHIITLFIQLAARLEVSSKNVHGRDVLLKSWDSDSPAMFCSTSSKYKKNRLVKERKYRSNGKHNILDNVEYTSDRDIRRRLSKLNKKSMGSDSETSDDLDRSFDDDKSDSDTTSTQSESDHEVRSQILIREPRGDGCFSPEEESGFITDDREWGARMTKASLVPPVTRKYEVIDHYCIVADEEEVRRKMRVSLPDDYAEKLSAQKNGIEESDMELPEVKDFKPRKQLGNEVIEQEVYGIDPYTHNLLLDSMPGDLDWSLQEKHLFIEDVLLQTLNKHVRSSTGTGNTPMSYPLQPVIDDIRRCAEEDCDARMIRMCQGILKAIDSRPDDKYVAYRKGLGVVCNKEEGFCQDDFVVEFLGEVYPVWKWFEKQDGIRSLQKDSTDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGQYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDSHGILDRHYLMLEACESNSVSEEDYNDLSRAGLGICLLGGLPDWLIAYAARLVRFINFERTKLPEEILKHNLEEKRKYFSDVCLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPRKAPPPIEKLSPEAIVSSLWKGEGSFVEELLQCIAAHVEEDILNDLKAKIHAHDPSGSKDIQKELRKSLLWLRDEIRSLSCTYRCRHDAAADLLHIYSYTKHFFRIHEYQTITSPPVHISPLDLGPKYTNKLGAEIQEYRKVYGKSYCLGQLIFWHNQSNADPDHSLVRASRGCLSLPDISSFYTKAQKPSQNRVYGPRTVRSMLARMEKQPQRSWPKDQIWLYRSCPKFFGSPMLDAVINNSTLDGEMVHWLRHRPEAAWDR 2351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01918 2351 SUPERFAMILY SET domain 1799 1947 IPR046341 -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 353 431 - -
Vifa1g01918 2351 Gene3D SET domain 1764 1955 IPR046341 -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 908 956 - -
Vifa1g01918 2351 SUPERFAMILY F-box domain 1180 1223 IPR036047 GO:0005515
Vifa1g01918 2351 Pfam SET domain 1862 1924 IPR001214 GO:0005515
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 438 452 - -
Vifa1g01918 2351 SMART set_7 1790 1930 IPR001214 GO:0005515
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 186 200 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 229 562 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 942 956 - -
Vifa1g01918 2351 ProSiteProfiles SET domain profile. 1785 1924 IPR001214 GO:0005515
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 236 256 - -
Vifa1g01918 2351 CDD F-box_SF 1193 1223 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 476 490 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 257 308 - -
Vifa1g01918 2351 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1935 2350 IPR045606 -
Vifa1g01918 2351 CDD SET_SETD2-like 1798 1946 - -
Vifa1g01918 2351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 395 2350 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 461 475 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 185 205 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 309 352 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 1546 1593 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 491 528 - -
Vifa1g01918 2351 MobiDBLite consensus disorder prediction 1546 1608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01918 Vifa-Chr1 310898241 310911764 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g01918 SET 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01918 K22748 - gmx:100776205 3586.19