Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01917 ATGGGCGATGGAGGTGTCTTATGCATGCCTTTGCAGTATAATATGGAGAGGTTATCGAGTTCAGAGAAAACGCATTGCGGAGGCAATAGTGGGAATGTCTTCAACTTCAAGTTGCTCAAGAATATGAAATCGAGAAAGAGTGAATTAGCATTGGATAGAGTGGATAAGAGAAGTGGAAGTGATGTTGAGAATGATGAAATGGTATGTGGTGATAAGGTGCAGAAGGAAGAAGTTGAAGAGGGTGAGTTGATTGCTTTGAAGTGGCCTAGAAGTGAAGTTGAAATAGAAAATGGAGAGTTTCTGCCGGAAATAAATATGTCGTTGAGACGAAGTGAGGATGAGAACGAGGAGATTGTTAGTGATAGATGGAAAGCAAGGGAGTTTGAGAAGGGAGAATTTCATCATGGGAAATGGAGAAGAGACGATGTGGAAAGAGGGGAGATAGTTCATGAGAAGGCTAGGAGAGGAGAAAATGAATATGGTGGACCATGGAGAGGTGTGAAAGATGATGTTGAGAGAGGAGAGTTTATTCCAAATAGATGGCATAATGGATCAATTGGGAAGAATGATTATGGTAACAGCAGTAACCGCAGAAATTATTCAGGTAAGGACAAAGTTTGTAAATTTCAACGTGATCGTACACCACCTTCTTGGAGATATACAGGTGAAGATTCTATTAGGAAGAAAGAATTTATTAATAGAAGTGGGAATCAGCATGCTAAAATTTCTCCCAGGTGGGAGAATGCCCAGCAGAGGAATATAAGGAACGGTTCAAAGATTGTAGATGACGAGAAAAATGCATATAGCAATGGTAAGGATCATACACGAGATTACTCTTCTGGAAGTCGCTTGAAGAGGCTCGGTAATGATTTTGACAGCTATGAGCGGAAGCATTCTGCAGATTTTACAAGTTCAAAAAGTAGAAAGCTTTCTGATGATAGCTATCCTTATTCAGAGAGCTATTCTCGTCGCCCTGCGGAGCAGTCTTATAGAAATAATAATTCTACCAAACTTTCTTCAGAAAAGTATTCTTCTAGGAATCATGAATCTTCTTTTTCTACCAGACCAGCTTATGACAGACATGAACGCAGCCCTGTTCATTCTGAGTGGTCCCCACATGACCGAAGTAGGTATTACGATCATAGAGAGCGCACTTCAGTGCGCCGATCGCCCTTTAGTCGTGAGAGATCTCCATATAGCCGGGAGAAATCCCCCCATGGTCGGGAGAGGTCCCCATATATGAGGAGCTGGGACAGAAGTCGACAGCATGATCATAAATTGAGAAGTCCAGCACCACGCGTCGAGCAGTTGCCACAAGATCAAGGTCGGCGTCATGATCACAGGGACTGTACTCCAAATTTAGTAGAAGGATCCCCCCTTGATCAAACTAGGAAGGATGTTCATGATGAAACAAGTTGCAAGAACTCATCATGTGATAAGCAGAATTCCCCAAATAGTTGTCAGAGTGATGAAGATAAACTCATTCAGAAGGAGTTGGATTTTTCAGTTGCAGAATCTCGAGGTGAAAGAAACATGCAAAAGACTGACGAGTCAATTGAGAAAGATATTAGTGATAGTCAACCCGTTGAGGAACAGAAGTCCTGTAGTCCAACTATTGATCCGAAAGAATCTCCACACCTTGAGCCACAACCACCTCCAGATGAGCTGCCTTCAATGGAAGAAGATATGGACATTTGTGATACCCCTCCTCATGTCCCTGTGGTGACAGATTTGTCGTCAGGAAAATGGTTTTACCTTGATTATGGAGGTGTAGAAAATGGGCCTTCCAAATTGTGTGACATTAAGCTCCTTGTTGATGAAGGGGTACTAATGTCAGATCATTTTGTCAAGCACTTGGATAGTGACAGATGGCTAACAGTTGAAAATGCAGTGTCGCCATTGGCTGCTCTGAGTTTCCCGTCTATTGTGTCAGATACAATAACTCAGCTTGTAAATCCTCCAGAGGCTTCTGGTAATATTTTGGCCGATGCTGCAGATATTCAATCTGGTCCTGAGAATTATCTAGAAAAGCCGGGGCCCTCGCTGCTGCCACACGGACAACCTAGCGAGAGTGTGCTTACATCTGAACTTTTGGACAACTTCTATATTGATGAAAGAGTTCAAAATCTGTTAGAGGGTTATGATGTCACTCCTGGGTTGGAACTTGAGGCAGTAAAAGAAGCTTTGCAATTGAAGTTTGAATATGCAAAGGAAGATGGATTAGGAGACTATGAAGGTTTTCCTTCGCATGTTTCCCGCCCTAGGGAAGATTGTGATTCAAGTACTTATTTAGCAACAAGAGATTCTGAATCTCAGTTAAGTATAGACAACATGGATAATGGGTTTGGCATTCCTAAGGATTGGTTTTCTACCCATTGGCCATGCAAAGGTGGTGACTGGAAGAGGAATGATGATGCCCACGTTCGATGTTCTAGGAAAAAACTTGTTCTAAATAATGGTTTTCTGTTGTGCCAAATGCCGAAGTCTGGATGTGAAGATCCTCGATGGCCTGAAAAAGATGACTTGTATTTTCCTTCTCAAACCAGGAGGCTTGATCTCCCTTTGTGGGCTGTTGGTGCTGATGAGTGGGTTGATTGCAATGCTGCAAGCAAGTCTATTCAAAGTAAGCCTTCTTCTGTCAAAGGAATGAAAGGAAATGTTCTTTCGGTGGTAAGGATAAATGCATGCGTTGTCAATGATCAGGGATTGCTGCTCACTGAGTCACGCCACCAGACCCGAGGCAAGGATAGACAACATCCAAGGTCAGCTTGGCCATTCACTTCAACCTGTGATAGTAAGAGATCATCAACTGAAGACGATTCTCAGTCAAAATCAGTTAGTGATCAAGGTTCTTACCAAAGCATGGAGTCCATTAGTGTCCCTAAAGACCATGTCTGTACTATCCAGGAGTTGCAGCTACATTTGGGTGACTGGTATTACATTGATGGTTCTGGACGTGAGAAAGGGCCTTCATCATTTTCAGAGCTACAACATTTAGCAGATCAAGGAATTGTAAAAAGGCATAGCAGTGTGTTTAGGAAACATGATAAACTCTGGGTTCCTATTACATCTACCGCAGAAACTACAGATGTCTGTTTCACAAGCCACCAAAAAAGCAGTTCAACATTGGGTGCATGCTCTGATCATCAATCAGAGCAAACTCAAGGTGTTTCATATGGTGGTGGATCTTACACAAGTTCAAGTATGTTTAACTGGATACACCCTCAGTTTGTTGGTTTTACTCGTGGGAAGCTGCACGAACTGGTTATGAAATCATACAAGAGCCGGGAGTTGGCCGCTGCTATAAATGAGGTTTTAGATCCCTGGATCAATGCAAGACAACCAAAGAAAGATATTGAGAAACAAATATATTGGAAATCAGAAGGCGACATGCGAGCTGCCAAAAGAGCCCGGATGCTGGTTGATGATAGTGAAGAAGACAGTGGTTTGGAAGATGATGTTACCATTGACAAGAATGAACCCACTTTTGAAGATCTATGTGGTGATGCTACTTTTCCTGAAGACGAAATTGGTATCTCTGATTCTGAAGTGGGAAGCTGGGGCTTATTGGATGGTCCGGTATTGGCACGAATTTTTCATTTTTTGAGATCTGATTTTAAGTCCCTTGTATTTGCATCGATGACGTGCAAGCATTGGAGTGCTGCTGTAAGGTTTTACAAGGAAGTTTCAATACAGGCCAATTTGTCATCCTTAGGGCCTTCTTGCACTGATACTGTGTTGTGGAACATTATGAATGCCTATGAGAGAGACAAGATCAATTCAATCATTCTAATGGGGTGTAACAATATTACGGCTGACATACTTGAGAAAATTCTTCTTTCATTTCCTGGTTTATGTACCATAGACATTAGAGGATGCAGCCAGTTTAGAGAGCTAACTCCTAAATTTACCAATGTGAAATGGATCAAGAGCAGAAGTTCACGCATGGATAGAATTACAGAACAAGTTTCATCTACATCCAAACCCAGCAATTTAGGAATAGATGGTTTTGGTCAATTGAAAGAGTATTTTGATAGCGTGGATAAGAGAGATTCGGCAAAGCAGTTATTTCGGCAAAACTTATACAAGCGGTCCAAACTATATGATGCTAGAAGGTCCTCTTCCATTCTATCTAGGGATGCTCGTACAAGACGTTGGGCTATTAAGAAGTCTGAAAGTGGTTTTAAGAAGATGGAGGAATTCCTCGCTTCGAGACTAAAGGAAATCATGAAGTCAAATTCTTGTGACTTCTTTGTACACAAGGTTGCAGAAATTGAGGCTAAAATGAAAAATGGTTATTACAGTAGCCGTGGATTGAGCTCTGTCAAAGAGGACATAAGTAGAATGTGCCGTGATGCAATAAAAGCAAAAAATCGGGGTGATTCTAGTGACATGAATCACATTATCACATTATTTATTCAACTTGCAGCTCGGTTGGAAGTGAGTTCTAAAAATGTGCATGGCAGAGATGTCCTACTGAAGTCATGGGATAGTGACTCGCCAGCAATGTTCTGTTCTACTTCGTCAAAGTATAAAAAAAATAGATTAGTGAAAGAAAGGAAGTACAGGAGTAATGGAAAACATAATATTTTGGATAATGTAGAGTATACCTCTGATAGAGATATTAGGAGGCGCTTATCAAAGTTGAATAAGAAATCCATGGGCTCCGACAGTGAAACATCTGATGATCTTGATCGGTCTTTTGATGATGACAAGAGTGACAGTGATACTACGTCAACTCAGTCTGAAAGTGACCATGAAGTACGCTCACAAATTTTGATTAGGGAACCAAGAGGGGATGGATGTTTCTCACCTGAGGAAGAGTCGGGTTTCATAACTGATGACCGAGAGTGGGGTGCTCGCATGACAAAAGCAAGTCTGGTTCCTCCAGTTACCAGGAAATATGAAGTCATTGATCATTATTGCATTGTAGCTGATGAGGAGGAGGTGCGGAGGAAGATGCGGGTTTCATTACCAGATGATTATGCAGAGAAGCTGAGTGCACAAAAGAATGGCATAGAGGAGTCAGATATGGAGCTTCCTGAAGTCAAAGATTTCAAACCTAGAAAGCAGCTTGGAAATGAGGTTATTGAGCAAGAGGTTTATGGAATCGATCCTTATACACACAACCTTTTGCTTGATTCTATGCCAGGGGATTTAGATTGGTCTCTGCAAGAGAAGCATTTGTTTATAGAAGACGTGCTCCTTCAAACATTGAATAAGCATGTTAGGAGCTCTACTGGAACTGGAAATACTCCAATGAGCTACCCTTTGCAGCCTGTTATTGACGATATTAGAAGATGCGCCGAAGAAGATTGTGATGCAAGAATGATTAGAATGTGTCAAGGTATTCTAAAGGCCATAGACAGTCGTCCAGATGACAAATATGTAGCTTATAGAAAGGGGCTTGGTGTTGTTTGCAACAAGGAAGAAGGCTTCTGTCAAGATGATTTTGTTGTGGAGTTTTTGGGAGAGGTTTATCCTGTGTGGAAGTGGTTTGAGAAACAAGATGGGATTCGATCTCTGCAGAAAGATAGTACAGATCCAGCACCAGAGTTCTATAACATCTACCTTGAGAGACCAAAGGGTGATGCGGATGGGTATGACTTAGTTGTCGTTGATGCCATGCACAAAGCTAATTATGCCAGTCGAATATGTCATTCTTGCCGACCCAATTGTGAAGCCAAAGTCACCGCTGTTGATGGTCAGTATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTTGATTACAATTCTGTTACTGAGAGCAAGGAGGAGTATGAAGCATCGGTTTGTTTGTGTGGAAGCCAAGTATGCCGCGGGAGCTACTTGAATCTGACTGGTGAAGGGGCGTTTCAAAAGGTTTTGAAGGACTCACATGGAATTCTTGATCGGCATTATTTGATGCTAGAAGCTTGTGAATCAAACTCCGTGTCTGAAGAGGATTATAATGACCTCAGTAGAGCTGGTTTAGGCATTTGTTTGCTTGGGGGCCTGCCAGATTGGCTTATTGCCTATGCAGCCCGCCTTGTGAGATTCATCAATTTTGAAAGAACGAAACTTCCTGAAGAAATTCTAAAGCATAATCTGGAAGAAAAGAGAAAATATTTTTCAGATGTATGTCTTGAAGTTGAAAGGAGTGATGCTGAGGTTCAGGCGGAGGGAGTGTACAACCAAAGACTTCAGAATCTTGCTGTCACTCTCGATAAGGTAAGGTATGTTATGAGATGTATATTTGGTGATCCTCGGAAAGCGCCTCCTCCTATTGAGAAGCTCAGTCCTGAAGCAATTGTTTCGTCTCTCTGGAAAGGAGAGGGCTCATTTGTTGAGGAGCTTCTTCAGTGCATAGCCGCTCATGTGGAAGAAGACATCTTGAATGATCTCAAAGCCAAAATTCATGCCCACGATCCTTCAGGTTCGAAAGATATTCAGAAAGAGCTTCGGAAATCTCTATTATGGTTGAGGGATGAGATCCGAAGTCTTTCTTGTACATATAGATGCCGGCATGATGCTGCTGCTGACTTACTCCATATTTACTCTTATACCAAGCACTTCTTTAGAATACATGAATATCAAACCATTACTTCACCGCCCGTCCATATTAGTCCACTGGACTTAGGCCCCAAGTACACTAACAAGCTGGGAGCAGAGATTCAGGAGTACCGGAAGGTATATGGAAAAAGTTATTGTTTGGGGCAGCTGATCTTTTGGCATAATCAGAGTAATGCAGATCCAGATCATAGCTTGGTTAGAGCAAGCAGGGGGTGTTTGTCTTTACCAGACATCAGTTCCTTTTATACAAAGGCTCAGAAGCCATCACAGAATCGTGTTTATGGTCCAAGGACTGTCAGATCTATGTTGGCAAGAATGGAGAAGCAGCCGCAGAGATCCTGGCCCAAAGACCAGATATGGTTGTATAGAAGTTGTCCAAAATTCTTTGGTAGCCCAATGTTAGATGCTGTAATAAATAACTCTACATTGGACGGAGAGATGGTTCATTGGTTGAGGCACAGACCGGAGGCCGCATGGGACCGTTAA 7059 0.4202 MGDGGVLCMPLQYNMERLSSSEKTHCGGNSGNVFNFKLLKNMKSRKSELALDRVDKRSGSDVENDEMVCGDKVQKEEVEEGELIALKWPRSEVEIENGEFLPEINMSLRRSEDENEEIVSDRWKAREFEKGEFHHGKWRRDDVERGEIVHEKARRGENEYGGPWRGVKDDVERGEFIPNRWHNGSIGKNDYGNSSNRRNYSGKDKVCKFQRDRTPPSWRYTGEDSIRKKEFINRSGNQHAKISPRWENAQQRNIRNGSKIVDDEKNAYSNGKDHTRDYSSGSRLKRLGNDFDSYERKHSADFTSSKSRKLSDDSYPYSESYSRRPAEQSYRNNNSTKLSSEKYSSRNHESSFSTRPAYDRHERSPVHSEWSPHDRSRYYDHRERTSVRRSPFSRERSPYSREKSPHGRERSPYMRSWDRSRQHDHKLRSPAPRVEQLPQDQGRRHDHRDCTPNLVEGSPLDQTRKDVHDETSCKNSSCDKQNSPNSCQSDEDKLIQKELDFSVAESRGERNMQKTDESIEKDISDSQPVEEQKSCSPTIDPKESPHLEPQPPPDELPSMEEDMDICDTPPHVPVVTDLSSGKWFYLDYGGVENGPSKLCDIKLLVDEGVLMSDHFVKHLDSDRWLTVENAVSPLAALSFPSIVSDTITQLVNPPEASGNILADAADIQSGPENYLEKPGPSLLPHGQPSESVLTSELLDNFYIDERVQNLLEGYDVTPGLELEAVKEALQLKFEYAKEDGLGDYEGFPSHVSRPREDCDSSTYLATRDSESQLSIDNMDNGFGIPKDWFSTHWPCKGGDWKRNDDAHVRCSRKKLVLNNGFLLCQMPKSGCEDPRWPEKDDLYFPSQTRRLDLPLWAVGADEWVDCNAASKSIQSKPSSVKGMKGNVLSVVRINACVVNDQGLLLTESRHQTRGKDRQHPRSAWPFTSTCDSKRSSTEDDSQSKSVSDQGSYQSMESISVPKDHVCTIQELQLHLGDWYYIDGSGREKGPSSFSELQHLADQGIVKRHSSVFRKHDKLWVPITSTAETTDVCFTSHQKSSSTLGACSDHQSEQTQGVSYGGGSYTSSSMFNWIHPQFVGFTRGKLHELVMKSYKSRELAAAINEVLDPWINARQPKKDIEKQIYWKSEGDMRAAKRARMLVDDSEEDSGLEDDVTIDKNEPTFEDLCGDATFPEDEIGISDSEVGSWGLLDGPVLARIFHFLRSDFKSLVFASMTCKHWSAAVRFYKEVSIQANLSSLGPSCTDTVLWNIMNAYERDKINSIILMGCNNITADILEKILLSFPGLCTIDIRGCSQFRELTPKFTNVKWIKSRSSRMDRITEQVSSTSKPSNLGIDGFGQLKEYFDSVDKRDSAKQLFRQNLYKRSKLYDARRSSSILSRDARTRRWAIKKSESGFKKMEEFLASRLKEIMKSNSCDFFVHKVAEIEAKMKNGYYSSRGLSSVKEDISRMCRDAIKAKNRGDSSDMNHIITLFIQLAARLEVSSKNVHGRDVLLKSWDSDSPAMFCSTSSKYKKNRLVKERKYRSNGKHNILDNVEYTSDRDIRRRLSKLNKKSMGSDSETSDDLDRSFDDDKSDSDTTSTQSESDHEVRSQILIREPRGDGCFSPEEESGFITDDREWGARMTKASLVPPVTRKYEVIDHYCIVADEEEVRRKMRVSLPDDYAEKLSAQKNGIEESDMELPEVKDFKPRKQLGNEVIEQEVYGIDPYTHNLLLDSMPGDLDWSLQEKHLFIEDVLLQTLNKHVRSSTGTGNTPMSYPLQPVIDDIRRCAEEDCDARMIRMCQGILKAIDSRPDDKYVAYRKGLGVVCNKEEGFCQDDFVVEFLGEVYPVWKWFEKQDGIRSLQKDSTDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGQYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDSHGILDRHYLMLEACESNSVSEEDYNDLSRAGLGICLLGGLPDWLIAYAARLVRFINFERTKLPEEILKHNLEEKRKYFSDVCLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPRKAPPPIEKLSPEAIVSSLWKGEGSFVEELLQCIAAHVEEDILNDLKAKIHAHDPSGSKDIQKELRKSLLWLRDEIRSLSCTYRCRHDAAADLLHIYSYTKHFFRIHEYQTITSPPVHISPLDLGPKYTNKLGAEIQEYRKVYGKSYCLGQLIFWHNQSNADPDHSLVRASRGCLSLPDISSFYTKAQKPSQNRVYGPRTVRSMLARMEKQPQRSWPKDQIWLYRSCPKFFGSPMLDAVINNSTLDGEMVHWLRHRPEAAWDR 2352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01917 2352 SMART set_7 1791 1931 IPR001214 GO:0005515
Vifa1g01917 2352 CDD F-box_SF 1194 1224 - -
Vifa1g01917 2352 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 142 2351 - -
Vifa1g01917 2352 SUPERFAMILY SET domain 1800 1948 IPR046341 -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 353 431 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 908 956 - -
Vifa1g01917 2352 Gene3D SET domain 1765 1956 IPR046341 -
Vifa1g01917 2352 SUPERFAMILY F-box domain 1181 1224 IPR036047 GO:0005515
Vifa1g01917 2352 Pfam SET domain 1863 1925 IPR001214 GO:0005515
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 438 452 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 1547 1594 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 186 200 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 229 562 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 942 956 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 236 256 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 1547 1609 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 476 490 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 257 308 - -
Vifa1g01917 2352 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1936 2351 IPR045606 -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 461 475 - -
Vifa1g01917 2352 CDD SET_SETD2-like 1799 1947 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 309 352 - -
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 185 205 - -
Vifa1g01917 2352 ProSiteProfiles SET domain profile. 1786 1925 IPR001214 GO:0005515
Vifa1g01917 2352 MobiDBLite consensus disorder prediction 491 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01917 Vifa-Chr1 310898241 310911764 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g01917 SET 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01917 K22748 - gmx:100776205 3592.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01917 1 310898241 310911764 Vifa1g01917 1 310898241 310911764 ECH