Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01916 ATGGACCCAAATTCACACTCCATCTTTTCCGGTAACACCTCCTCCTCTGCCATAGACCCAATGTTCTCCACCTTCACCCTCCAATCTCTTCTCAATTTCAACCCTTCCTTCTTCACCGACAACTTCCACGCCATAACCGACCACCCTCATCAACTCCCCAGCCTCCCTCGATCCCTCACTGATCAAACTCCATACCTTAACGACAACAAAAACGCTCTCATAGTCCCCAAAACCGAACATCCTCTTAATCTTCCTCCATTACAACATTATCTCCCACTTCAACAACAACCCTTCAACTTCTTCCCCCAATACTATCCACCCTTTGAAACTTTCCACCATCTCCCTCAACTCCATTCCCCTGAACATTCTAACACAAAACGCCTCCGCCACCCGGAAACAACTCCACCACAACAGAAACAACCTCACTTTGTCCGTGGAAAATCTCCTTCTTTGATTCCTCAGAGCAAGTTAGCAAGACAGAGAAGACAAACTCTAAGCGAGAAAACACGTTGTTTGCAGAAACTAATGCCATGGGATAAGAAAATGGACCAAGCTACCCTTTTCGAAGAAGCTTACAAATATGTTCAGTTTTTGCAGGCACAGATCTCTGCTCTTCAATCAATGCCTTCTCATTCAACCACCACCACCACCTACAGAGGCGGCGGAAATGGTGTTTTTGGTGAGCTGAAGAAGCTGAACAGAAAGCAGGCTTTGCAGGTTCTGGTAAACTCACCGGTTGCACAAACAAAGCTTTGTTCACAGGGTTACTGTGTTTACTCCATGGAACAAATCTCTGTGCTCAGAAAATCTTCAGAGAGAAGACAAGAAGAACAACAGCAGCAGAATATGTCTGATAATGCTTCTTCTTCCAACACTTTCTTCCACTAA 888 0.4516 MDPNSHSIFSGNTSSSAIDPMFSTFTLQSLLNFNPSFFTDNFHAITDHPHQLPSLPRSLTDQTPYLNDNKNALIVPKTEHPLNLPPLQHYLPLQQQPFNFFPQYYPPFETFHHLPQLHSPEHSNTKRLRHPETTPPQQKQPHFVRGKSPSLIPQSKLARQRRQTLSEKTRCLQKLMPWDKKMDQATLFEEAYKYVQFLQAQISALQSMPSHSTTTTTYRGGGNGVFGELKKLNRKQALQVLVNSPVAQTKLCSQGYCVYSMEQISVLRKSSERRQEEQQQQNMSDNASSSNTFFH 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01916 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 211 IPR036638 GO:0046983
Vifa1g01916 295 Gene3D - 153 219 IPR036638 GO:0046983
Vifa1g01916 295 MobiDBLite consensus disorder prediction 280 295 - -
Vifa1g01916 295 SMART finulus 155 204 IPR011598 GO:0046983
Vifa1g01916 295 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 137 265 IPR045843 GO:0003700|GO:0006355
Vifa1g01916 295 MobiDBLite consensus disorder prediction 269 295 - -
Vifa1g01916 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Vifa1g01916 295 MobiDBLite consensus disorder prediction 117 133 - -
Vifa1g01916 295 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01916 Vifa-Chr1 310780173 310781060 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01916 161 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.946 1.33e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01916 - - psat:127082276 421.009