Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01910 ATGAGTAAACTTCCAAGTCCATGCCATGCCAAAGTTCGCCATCTTCATATATTCTTCAATCTTCATGCCCCTTCAACCGAACAGCCAACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCGGTGATGGATGAGTACTCAGCATGTGATGACATTATTCAACCAATTCAAGTTGTTGTGTATGAGATGAAATTTGGGTTATCACTGGTGAAAATGAAAGTTGATGCTAAATCAAAAAGCGATTATGATGCTCAAAAACAGTTCAAGTTTAAGTCTCGAGAAATTCAAACTAAGAGTGTTATTGAGGTTGAAATACCAGCTCTTGCAAATTCAAGTGCAGCTGAAGCATTTTCCGAATGGAAAGAATTTTCACTTGAAGAAAAATACAACTGA 474 0.3734 MSKLPSPCHAKVRHLHIFFNLHAPSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVMDEYSACDDIIQPIQVVVYEMKFGLSLVKMKVDAKSKSDYDAQKQFKFKSREIQTKSVIEVEIPALANSSAAEAFSEWKEFSLEEKYN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01910 157 Pfam Ring finger domain 30 69 IPR001841 -
Vifa1g01910 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 142 IPR013083 -
Vifa1g01910 157 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Vifa1g01910 157 CDD RING-H2_BRAP2 29 69 IPR047243 -
Vifa1g01910 157 PANTHER BRCA1-ASSOCIATED PROTEIN 24 69 - -
Vifa1g01910 157 SMART ring_2 31 70 IPR001841 -
Vifa1g01910 157 SUPERFAMILY RING/U-box 26 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01910 Vifa-Chr1 310215624 310216787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01910 27 109 C3H Transcription Factor Family AT1G72220 32.941 3.39e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01910 K10632 - aew:130754524 103.219