Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01909 ATGCACATCCACATGAAAGCTAAGTTAAAAGCCACATCCATTTCTTTTCAAAACCCTTCACTCTTCAACACAATCACTTCCCCTCCACCACTTCCTCAACCAGAAGCACTTAAAGGCTGTCTTGGAAGCCTAGATGGAGCATGTATTGAAAAACTTTTACTCCATTGTGCAAGTGCTTTGGAAAGCAACGCCATAACCCTAGCTCAACAAGTTATGTGGGTCCTAAACAACGTTGCTTCACCGTTAGGTGACACTAACCAAAGACTAACCTCATGGTTTCTAAGAGCGCTAATCTCTAGAGCTTCAAGAATCTATCCTACTTCAATGAATTTCAAAGGAAGTAACATTATTCAAAGAAGGTTGATGTCGGTTACCGAACTCGCCGGGTATGTTGATCTTATTCCTTGGCATAGGTTTGGATTTTGTGCTTCAAACAATGAAATTTTCAAAGCAATAAAGGGATTCAAAAGGGTGCATATTTTAGATTTTAGCATAACACCTTGTATGCAATGGCCTACTTTTATAGATTATTTGGCTAAATTACAAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCGTCTTTTAGGCCAATGGTTCCTCCTTTGGTTAATATATCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCAAAATTTAAGGATGTCCCTTTCGAGTTTAATGTTATTGAAGATAATAATGTTTTGAATTCGATGACATCTGAAGAATTGAGGAATATTGAATCAACTAGCTTTGATTTTGAGTCAATGTTGAGTCTCTTGAATCCTAGTATGTTGAACCTTAGGGAAGATGAAGCTTTGGTTATAAATTGTCAAAATTGGCTACGTTATTTGTCGGACGATAGAAAAGGTCAAAACATTTCGATTCGAGACGTTTTTATGAATTTAGCTAAAGAACTTAACCCTCAAATTGTGCTATTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATTACAGCTTCTTTTAACCATTTATGGATACCCTTTGATGCGTTGGACACTTTTTTGCCTAAAGATAGTTGTCAAAGGACTGAGTTTGAATCTGACATAGGGGAGAAAATTGAAAACATTATAAGCTTTGAAGGGCATCAAAGGATTGAGAGATTGGAGTCGGGGATGCAAATGTCACAAAGAATGAAAAATGTTGGTTACTTTAGTGTTCCATTTTGTGATGAAACTGTTGTTGAAGTTAAGAGTTTGCTTGACGAACATGCTAGTGGATGGGGAATGAAAAGAGAAGAAAACATGTTGGTTCTTACATGGAAAGGAAATAGTTGTGTGTTTGCGACCGCTTGGGTCCCTAGTGAAATGAGTTTAGATATGTAG 1362 0.3693 MHIHMKAKLKATSISFQNPSLFNTITSPPPLPQPEALKGCLGSLDGACIEKLLLHCASALESNAITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRIYPTSMNFKGSNIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFKRVHILDFSITPCMQWPTFIDYLAKLQEGPPSLRITVPSFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIEDNNVLNSMTSEELRNIESTSFDFESMLSLLNPSMLNLREDEALVINCQNWLRYLSDDRKGQNISIRDVFMNLAKELNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRTEFESDIGEKIENIISFEGHQRIERLESGMQMSQRMKNVGYFSVPFCDETVVEVKSLLDEHASGWGMKREENMLVLTWKGNSCVFATAWVPSEMSLDM 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01909 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 434 IPR005202 -
Vifa1g01909 453 ProSiteProfiles GRAS family profile. 40 445 IPR005202 -
Vifa1g01909 453 Pfam GRAS domain family 50 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01909 Vifa-Chr1 309725666 309727027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01909 25 446 GRAS Transcription Factor Family AT3G49950 43.981 4.36e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g01909 GRAS 6.2e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01909 - - gmx:100802093 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01909 1 309725666 309727027 Vifa1g01909 1 309725666 309727027 ECH