Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01907 ATGGCTGAGATTTGTTGTGGTGTTGTTGGAGGAGGAGAAACTCCTGCTCCAAATATCGAACCAAACTCGCGGCCTTCCCGTCGCCGGAGTTTGGATTTTCTTCCGTTGAAATACATAGACGTGGCGATTCCGGCTGAGAATGTTAGCCGGAAACGTCAGAAGGTAGATCTACTTGTTTCTCTTCCTCCGCCACAGGAGGAATCAAACAAAAACGAAGTTGTTCCTGTTGTGAATTGTTTGAATGTTTCTGAGATGGAAAAGGAGGTTGTTGTTGTTGAAGAGTGTCCTAAGTATGGAATAACATCGGTTTGTGGAAGGAGAAGAGACATGGAAGACGCTGTTTCGGTGCATCCATCTTTTTGTAAAGAAAAGAGTGAACAGAATCAAAAACCGTTTCATTTCTTTGGTGTCTACGATGGTCACGGTTGCTCACATGTTGCAACTATGTGTAAACAAAGGTTACATGAAATCGTTGACGATGAGGTAAACAAAGAGAAAGAGAAAGTTGACTGGAAGTCAACGATGGAGAAGAGTTTCATTCGCATGGATGAAGAGGTTTTGAAATCTAGCAAAACTACTCAGAGCTTTACATGCAAGTGTGAGCTTCAAACTCCTCACTGTGACGCCGTTGGTTCCACCGCCGTCGTCGCTGTTGTCACGCCGGAGAAAATTATCGTCTCCAATTGCGGCGATTCTCGTGCCGTACTTTGCCGGAACGGTGTAGCTATTCCTCTTTCCACCGATCACAAGCCGGATCGACCCGATGAATTGGATCGGATCAATTCTGCTGGAGGACGTGTGATCTATTGGGATGGTGCAAGAGTGCTTGGAGTGTTGGCCATGTCAAGAGCCATTGGGGACAATTATTTGAAGCCGTATGTTATTTCGGAACCTGAGGTAACGGTAACAGAGAGGATGGACGAGGATGAATGTCTGATTTTAGCAAGTGATGGGTTATGGGATGTGGTGCAAAACGAGACTGCGTGTAGGGTGGTGCAGATGTGTCTCAAGGCGGAGAAGACGGCGTCGCCACCGGGGTCTCCGGGGAGTGATGTGGTGGGAGATGGTTCCGATAAGGCGTGTTCTGATGCTTCAATTTTGTTGACGAAGTTGGCTTTGGCGAGGCATAGTTCGGACAATGTTAGCGTGGTGGTTGTTGATTTGAGGAGACATCAACGTCAACAATAA 1188 0.468 MAEICCGVVGGGETPAPNIEPNSRPSRRRSLDFLPLKYIDVAIPAENVSRKRQKVDLLVSLPPPQEESNKNEVVPVVNCLNVSEMEKEVVVVEECPKYGITSVCGRRRDMEDAVSVHPSFCKEKSEQNQKPFHFFGVYDGHGCSHVATMCKQRLHEIVDDEVNKEKEKVDWKSTMEKSFIRMDEEVLKSSKTTQSFTCKCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAVLCRNGVAIPLSTDHKPDRPDELDRINSAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTVTERMDEDECLILASDGLWDVVQNETACRVVQMCLKAEKTASPPGSPGSDVVGDGSDKACSDASILLTKLALARHSSDNVSVVVVDLRRHQRQQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01907 395 PANTHER PROTEIN PHOSPHATASE 70 388 IPR015655 GO:0004722|GO:0006470
Vifa1g01907 395 ProSiteProfiles PPM-type phosphatase domain profile. 97 388 IPR001932 -
Vifa1g01907 395 ProSitePatterns PPM-type phosphatase domain signature. 134 142 IPR000222 GO:0043169
Vifa1g01907 395 SMART PP2C_4 82 386 IPR001932 -
Vifa1g01907 395 Pfam Protein phosphatase 2C 97 380 IPR001932 -
Vifa1g01907 395 CDD PP2Cc 97 339 IPR001932 -
Vifa1g01907 395 FunFam Protein phosphatase 2C 37 92 395 - -
Vifa1g01907 395 SUPERFAMILY PP2C-like 95 389 IPR036457 -
Vifa1g01907 395 Gene3D - 84 395 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01907 Vifa-Chr1 309576106 309577622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01907 96 395 PP2C-type Phosphatase Gene Family AT1G07430 64.706 4.11e-151 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01907 K14497 - gmx:100776356 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01591 2 425573771 425575312 Vifa1g01907 1 309576106 309577622 ECH
Vifa1g01907 1 309576106 309577622 Vifa1g01907 1 309576106 309577622 ECH
Vifa2g01591 2 425573771 425575312 Vifa1g01907 1 309576106 309577622 PCT