Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01905 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCCACATCTATTTCCTTTCAAAACCCTTCACTCTTCAACACAATCACTTCCCCTCCACCACTTTCTCAACCAGAAGCACTTAAAGGCTATCTTGGAAGCCTAGATGGAACATGTATCGAAAAACTTTTACTCCATTGTGCAAGTGCTTTGGAAAGCAACGACATAACCCTAGCTCAACAAGTTATGTGGGTCCTAAACAACGTTGCTTCACCGTTAGGTGACACTAACCAAAGACTAACCTCATGGTTTCTAAGAGCTCTAATCTCTAGAGCTTCAAGAATTTGTCCTACTTCAATGAATTTCAAAGGAAGTAACATTATTCAAAGAAGGTTGATGTCGGTTACCGAACTCGCCGGGTATGTTGATCTTATTCCTTGGCATAGGTTTGGATTTTGTGCTTCAAACAATGAAATTTTCAAAGCAATAAAGGGATTCGAAAAGGTGCATATTTTAGATTTTAGCATAACACCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAATTACAAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCAATGGTTCCTCCTTTAGTTAATATATCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCAAAATTTAAGGATGTCCCTTTCGAGTTTAATGTTATTGGAGATAATAATGTTTCGAATTTGATGACATCCGAAGAATTGAGGAATATTGAATCAACTAGCTTTGATTTTGAGTCAATGTTGAGTCTCTTGAATCCTAGTATGTTGAACCTTAGGGAAGATGAAGCTTTGGTTATAAATTGTCAAAATTGGCTACGTTATTTGTCGGACGATAGAAAAGGTCAAAACATTTCGATTCGAGACGTTTTTATGAATTTAGTTAAAGGACTTAACCCTCAAATTATGCTATTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATTACAGCTTCTTTTAACCATTTATGGATACTCTTTGATGCGTTGGACACTTTTTTGCCTACAGATAGTATTCAAAGGACTGAGTTTGAATCTGACATAGGGCAGAAAATTGAAAACATTATAAGCTTTGAAGGGCATCAAAGGATTGAGAGATTGGAGTCGGGGATGCAAATGTCACAAAGAATGAAAAATGTTGGTTACTTTAGTGTTCCATTTTGTGATGAAACTGTTGTTGAAGTTAAGAGTTTGCTTGATGAACATGCTAGTGGATGGGGAATGAAAAGAGAAGAAAATATGTTGGTTCTTACATGGAAAGGAAATAGTTGTGTGTTTGGGACCGCTTGGGTCCCTAGTGAAATGAGTTTAGATATGTAG 1362 0.3656 MHVHMKAELKATSISFQNPSLFNTITSPPPLSQPEALKGYLGSLDGTCIEKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPTSMNFKGSNIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFEKVHILDFSITPCMQWPTFIDSLAKLQEGPPSLRITVPSFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIGDNNVSNLMTSEELRNIESTSFDFESMLSLLNPSMLNLREDEALVINCQNWLRYLSDDRKGQNISIRDVFMNLVKGLNPQIMLLVDEDCDLSSSSLTSRITASFNHLWILFDALDTFLPTDSIQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNVGYFSVPFCDETVVEVKSLLDEHASGWGMKREENMLVLTWKGNSCVFGTAWVPSEMSLDM 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01905 453 ProSiteProfiles GRAS family profile. 40 445 IPR005202 -
Vifa1g01905 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 434 IPR005202 -
Vifa1g01905 453 Pfam GRAS domain family 50 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01905 Vifa-Chr1 309237162 309238523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01905 25 446 GRAS Transcription Factor Family AT3G49950 43.056 1.97e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g01905 GRAS 9.6e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01905 - - gmx:100802093 700.664