Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01904 ATGGAGGGATTTCACTCTGATGAGTACTGGTTTTGGATGAAGAGAAGGCAAATTCAAGCACAAACGGAATCATGGGAAGAAAAAGCATTTGCAGAAGATGCAGCTAGGAGTATACTGAATGGAAGCATATGGCCACCAAGATTCTATTCATGTAACTTTTGCAAAAGAGAGTTTAGGTCTGCACAAGCTCTTGGTGGTCACATGAATATTCATAGGAGAGATAGAGCTAGACTCAAACAAAATCTTAGCCCTCAAAACAACAATGATTTCATCAACTCATCATCACTAGGTAATCATTGTTTTCCTGCAAAAAGACGATCCATTTCGCCTCCTAGAATGATCTCAACTCTATCATCACCTTATTCTTCTTCAATTATATGGGGACAGAAGAAGATAGGGTCTAATATTACAAGAGAAGACAGTTTTAAGGATTGTGTTGAAACAAGTTTGTCTTTGGGAATGTTTGGACAAAAATCATCAACTGTTGTTCTTCCATGTGAGGAAAAAGGTATCATGTGTAAAAGATTGAAGACTAATAACAACACTTCTTCTTTGCCTTCTGTTTTCATCAAACCATGTTCAAATGATCATCATCAAAGGTTCTTGACTTTTCAACAACCTTCAGAAATTGTACTTGGAGTTAACCATGGAATGGAAGATTTAGATCTTGAACTTAGGCTAGGGAAACAACAAAAAGCTATTAAGTAG 708 0.3658 MEGFHSDEYWFWMKRRQIQAQTESWEEKAFAEDAARSILNGSIWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPQNNNDFINSSSLGNHCFPAKRRSISPPRMISTLSSPYSSSIIWGQKKIGSNITREDSFKDCVETSLSLGMFGQKSSTVVLPCEEKGIMCKRLKTNNNTSSLPSVFIKPCSNDHHQRFLTFQQPSEIVLGVNHGMEDLDLELRLGKQQKAIK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01904 235 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Vifa1g01904 235 SMART c2h2final6 49 71 IPR013087 -
Vifa1g01904 235 SUPERFAMILY beta-beta-alpha zinc fingers 46 75 IPR036236 -
Vifa1g01904 235 Pfam C2H2-type zinc finger 49 73 - -
Vifa1g01904 235 PANTHER OS07G0101800 PROTEIN 19 230 - -
Vifa1g01904 235 Gene3D Classic Zinc Finger 45 98 - -
Vifa1g01904 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01904 Vifa-Chr1 308467261 308467968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01904 11 80 C2H2 Transcription Factor Family AT2G37740 64.286 1.17e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g01904 zf-C2H2_6 2.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01904 - - tpra:123922631 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01904 1 308467261 308467968 Vifa1g01904 1 308467261 308467968 ECH
Vifa2g01586 2 423939917 423940705 Vifa1g01904 1 308467261 308467968 PCT