Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01894 ATGGCGAATCGGTGGTGGGATGGAAGAAGCACGGAAGCAAACCCAAACCCGGTTGAAGATTCGAACCAAACCGGTTCGAACCGGGTTGTGTCACGAAGGGAGCAAGAGTTCATGGAAAGCAACACCAACAACAGTAACAGTAACGTTACTCCAACGATGAGCAACAACAGCACCGTTAACGTTAACGGAGAAGACGACAACAATGAGCGTGACGGCGATGACCAGAACACCGGAAGCGGCCGGCGTCCCCGCGGGCGGCCTCCAGGTTCGAAGAACAAACCGAAGCCACCGGTGGTGATAACAAAAGAAACTCCAAACGCGCTTCGTAGCCACATCCTGGAAATCGCGAGCGGAAGCGATGTTGCTGAGAGTATTTCCACTTTTGCTAACCGTCGTCACCGCGGTGTTTCGGTTCTGAGCGGAACCGGCGTTGTTACCAATGTGACACTCCGGCAACCGACTGCTCCTGGAGGTATTATTGCTCTTCAGGGGAGGTTTGACATTCTGTCACTCTCTGGTGCTTTTTTGCCTCCGCCGTCTCCACCGGAGGCGACCGGGCTTACAGTCTATCTCGCTGGAGTTCAAGGGCAGGTGGTTGGAGGATTGGTGGTCGGGGCGCTGGTTGCGTCCGGCCCTGTGATGGTAGTTGCTGCTACTTTTGCTAATGCTACTTATGAGAGGCTACCATTGGAAGATGAACCAGTTGAAGAAGAAAACATGGAGCAAGAGGTTAATAACACTCGCAATATTATTAACAACAATGATGCTGGTGGTTCTGGTTCCGTTTCTGTGTCTGTGTCTGGTTCAGCGAGTGGAAGTGGTGCAACATCTCATGGATTAGGAGAATTCAATTTGAATCCGAATTTGATGAACGGTGGTGGGCACAACGTTGGACATGGACACGGGCACGGCCATGATATGTTTTGGCGTCCACCTCCTCCTCCTTATTGA 951 0.5195 MANRWWDGRSTEANPNPVEDSNQTGSNRVVSRREQEFMESNTNNSNSNVTPTMSNNSTVNVNGEDDNNERDGDDQNTGSGRRPRGRPPGSKNKPKPPVVITKETPNALRSHILEIASGSDVAESISTFANRRHRGVSVLSGTGVVTNVTLRQPTAPGGIIALQGRFDILSLSGAFLPPPSPPEATGLTVYLAGVQGQVVGGLVVGALVASGPVMVVAATFANATYERLPLEDEPVEEENMEQEVNNTRNIINNNDAGGSGSVSVSVSGSASGSGATSHGLGEFNLNPNLMNGGGHNVGHGHGHGHDMFWRPPPPPY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01894 316 MobiDBLite consensus disorder prediction 250 276 - -
Vifa1g01894 316 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 310 IPR014476 GO:0003680
Vifa1g01894 316 MobiDBLite consensus disorder prediction 14 63 - -
Vifa1g01894 316 Gene3D - 108 246 - -
Vifa1g01894 316 MobiDBLite consensus disorder prediction 1 100 - -
Vifa1g01894 316 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 235 - -
Vifa1g01894 316 ProSiteProfiles PPC domain profile profile. 105 241 IPR005175 -
Vifa1g01894 316 FunFam AT-hook motif nuclear-localized protein 108 237 - -
Vifa1g01894 316 CDD DUF296 109 191 IPR005175 -
Vifa1g01894 316 PIRSF ESCAROLA 18 316 IPR014476 GO:0003680
Vifa1g01894 316 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 221 IPR005175 -
Vifa1g01894 316 MobiDBLite consensus disorder prediction 294 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01894 Vifa-Chr1 307523082 307524032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01894 81 233 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 74.510 3.38e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01894 - - cam:101507777 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01582 2 423613692 423614604 Vifa1g01894 1 307523082 307524032 PCT