Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01891 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCTAGTGATTGTGTTTTTGCTCCTTACTTCTCTTATGAACAAGCTTCAACCCATTTTTCAGCTGTGCATAAGGTTTATGGTGCTAGTAATGTTTCTAAACTATTGTCACATCTTCCTATGCAGAATAGGAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGCATGCAAGATCCTATTTATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTAGCAAGTTTACAAGAGGAGATAGATATTCTTGGAAGTCTAATGGAAAATTCTAATGTTAGTATTGTGGATTGTGACAATGTCCAAGCACCAATGAATTCAAACAATGGAACACAATATTACCCTAATCAATTGGCTAATTATCTTTCACAAGAAGAAGGTTCCACAACATGTCAAAGTTTTGAATCATACATGAATATGGATATGGAAATTCCTAGTGCACATGGAATGGCTGAGCCTTTATATGGTGATTCCAACTCCAATGCATTAGAGAAATTTCTATCAGGAATTGATCAAGAGGGTTTCTTGAACCACCCTTGGTTTAAGCATAATTCAAACATGTAA 624 0.3734 MTGFGSSCGACKFLRRKCASDCVFAPYFSYEQASTHFSAVHKVYGASNVSKLLSHLPMQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDILGSLMENSNVSIVDCDNVQAPMNSNNGTQYYPNQLANYLSQEEGSTTCQSFESYMNMDMEIPSAHGMAEPLYGDSNSNALEKFLSGIDQEGFLNHPWFKHNSNM 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01891 207 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vifa1g01891 207 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vifa1g01891 207 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01891 Vifa-Chr1 306717555 306718686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01891 1 202 AS2 family AT5G06080 50.000 3.08e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g01891 LOB 6.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01891 K13945 - gmx:100809636 299.671