Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01884 ATGTTGGCGAAAGCTTGTGAGAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCGAAATGGAAAGAGTATAATGCTCAACTTGATGCGAGCAATGATGCGGATAAGCCCGTTCGAAAAGTTGCGGCTAAGGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTCGCGGTGTAATTATAGAGGTGTTAGGCAAAGGACATGGGGGAAATGGGTTGCTGAAATCCGTGAGCCGAATCGGGGAAGTAGGTTATGGTTAGGTACTTTTACTACTGCCATTGGTGCTGCTCTTGCTTATGATGAAGCGGCCCGGGCAATGTATGGTTCTTGCGCCCGTCTGAACTTTCCTAATGTTTCAGTTCCGAGATTCCCTGAGGTGTCTTCGAATGAATCTCCAGATGCAAACCAGTCGGGTTCCTCGATGGTAGTAACTGAGAATACCGAGTCGATGATAATACCGAATAACTCAGGGATAGGAATAGACGTTGGCAGTAATGATATGGAACCGATTTCCTTACCCGTAAGTGTAAAACAAGAGAACGAGTAA 561 0.4635 MLAKACEKGDGSKSLGKILAKWKEYNAQLDASNDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMYGSCARLNFPNVSVPRFPEVSSNESPDANQSGSSMVVTENTESMIIPNNSGIGIDVGSNDMEPISLPVSVKQENE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01884 186 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Vifa1g01884 186 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vifa1g01884 186 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vifa1g01884 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 155 - -
Vifa1g01884 186 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vifa1g01884 186 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vifa1g01884 186 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vifa1g01884 186 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Vifa1g01884 186 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vifa1g01884 186 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01884 Vifa-Chr1 305960555 305961115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01884 8 121 AP2-EREBP Transcription Factor Family AT2G40350 61.864 1.94e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g01884 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01884 - - tpra:123899058 318.931