Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01880 ATGTCTTCGCATTGGTGTCACAGGTGCAACAAATTTGTTAGCGTATGGAGGCTAGGGATGCCGATATGTTCCGATTGCGACAGTGGATTTGTGGAAGAGCTCGAATATCCAGCACATTCTCTTCATGCAGACGGTGTTCGTTCGAGGAGGTTACCTATGACGGCGGCCATGTACATGATGGGCCACCATAATAATAATTCAAATCAAAATCAGAATCAAAATCAAACTCCTCGTCGACGTTACTGCAGAAACAATATTCATGGCGGGGAACTTTCTACGTTTAACCCAATCATTATGATCCGCGGTGGTGGAACCTCGGAAGGAACGAGCCGCGAGGGTGAAGAAAGTCGCGGGTATGAGCTTTTCTACGAAGAGGGACCCGGTACCGGTCTCCGGCCATTGCCTCCAAGAATGTCTGAGACTCTTCTTGGACCTGGATTTGAAAGGGTGATGGAACAACTCTCTCATGTTGAAGCTAATCGTAATGGGAGCGAGACGAATAGCCGGAAACCATTACCGGCGGCAATATCAACGGTAGAATCGTTACCATCTATCGAAATAAATGATAATCACGTCGAGATGGAATTACAATGCGCTGTTTGCAAAGATCATTTCGAACAGGGAGTTATAGCCCGAGAAATGCCATGCAAACATATATACCATAATGAATGCATACTTCCATGGCTCGAGATTCGCAATTCTTGCCCTATTTGTCGCCATGAACTCCCATGTGAACTACCACAAAATACTAATAATGAACAAGAGAATGTTGGAATAACAATTTGGAGGTTACCGGGCGGTGGATTGGCGGTCGGAAGATTTATGGGTGGAAGTCGAGAGAATAACGAGGGAGAGCTTCCTATTGTTTACACAGAATTGGATGGTGGGTTCAATAGTGTTGGTGAACCAAGGAGGATTTCATGGTCAATGAGTACTACTTCAAATGGAGGAGGGAGGGGGAGGAGTAATATTGGGGGTGGAATTAGAAGAATGTTGAACAATTTGTTTGGATGTTTGGGAGGTGGTGATGGGAGTAGTAATCAACAAGGTTCAATTTCTACTACAAGAGAGTTTTCTGAAACTATGAACACAAGGAATAATAATAATAATAATAATGCATCTCGTAACAATGTGAATGCTTCTACAAGAGCTCGAAGAACTTGGTCTATGGATGTAAATAATGGTGGAATTAGACCATGGTAA 1203 0.4356 MSSHWCHRCNKFVSVWRLGMPICSDCDSGFVEELEYPAHSLHADGVRSRRLPMTAAMYMMGHHNNNSNQNQNQNQTPRRRYCRNNIHGGELSTFNPIIMIRGGGTSEGTSREGEESRGYELFYEEGPGTGLRPLPPRMSETLLGPGFERVMEQLSHVEANRNGSETNSRKPLPAAISTVESLPSIEINDNHVEMELQCAVCKDHFEQGVIAREMPCKHIYHNECILPWLEIRNSCPICRHELPCELPQNTNNEQENVGITIWRLPGGGLAVGRFMGGSRENNEGELPIVYTELDGGFNSVGEPRRISWSMSTTSNGGGRGRSNIGGGIRRMLNNLFGCLGGGDGSSNQQGSISTTREFSETMNTRNNNNNNNASRNNVNASTRARRTWSMDVNNGGIRPW 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01880 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 243 - -
Vifa1g01880 400 Pfam Ring finger domain 197 239 IPR001841 -
Vifa1g01880 400 SMART ring_2 198 238 IPR001841 -
Vifa1g01880 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 245 IPR013083 -
Vifa1g01880 400 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Vifa1g01880 400 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Vifa1g01880 400 Pfam Protein of unknown function (DUF1117) 257 364 IPR010543 -
Vifa1g01880 400 SUPERFAMILY RING/U-box 178 246 - -
Vifa1g01880 400 FunFam E3 ubiquitin-protein ligase RING1-like 159 245 - -
Vifa1g01880 400 MobiDBLite consensus disorder prediction 343 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01880 Vifa-Chr1 304756782 304757984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01880 131 245 C3H Transcription Factor Family AT5G01980 38.261 4.79e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01880 K11982 - gmx:100789228 385.571