Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01866 ATGAAAAAGAACTGCGAACTCTGCAAAGCTCCGGCTACAACTTTCTGTGAGTCCGACCAGGCTAGCTTATGCTGGGACTGCGATTCCAAGATCCACAGTGCAAATTTCCTTGTTGCCAGACACGTCAGGACTCTCCTCTGTCACCGGTGCCAGTCTCCGACGCCGTGGAAAGCCTCCGGTGCTACGCTTAGTAACGCGCTTTCTTTGTGTGAAACATGCGGTTGCGGTGGTGGTGGTGGAAGAAAATTTGAAGATGAACAGGAAGAAGAAAGTGAAGGTGACAATGAGAATGAGGATGACGATGAAGTAGATACTGATTTTGATGAGGAGGATGAAGAGGAAGAGGAGCTTGATGGTGATGAGGATGGTGATAATCAGGTTGTTCCTTGGTCGTCTACGGCGGCGGCGCCGCCGCCTTCCAGTTCTTCCGGTAGCGAAGAGTCGGTTAGTAAGTCTAACGATAACGATGAGGAGGTTGTTTCGAAGTTAGTTACAATAAACTCAATTTCTTTGAAACGACGTCGTGAAGAGGATCGTGATTTTCAGGCTTCAGATTCGAAAATTTGCGTAGATCAGCGTATGTACGGTGGTGAGAGGAGGAGAGACGACGGAGAACCGTCGTCGAAGGCGTTGATCCGGCAAGTTAACGACGGAAAGGTCACGAGCAATCTCAGCCGCACGATTGAGTTGGCCGTACAATAA 702 0.4929 MKKNCELCKAPATTFCESDQASLCWDCDSKIHSANFLVARHVRTLLCHRCQSPTPWKASGATLSNALSLCETCGCGGGGGRKFEDEQEEESEGDNENEDDDEVDTDFDEEDEEEEELDGDEDGDNQVVPWSSTAAAPPPSSSSGSEESVSKSNDNDEEVVSKLVTINSISLKRRREEDRDFQASDSKICVDQRMYGGERRRDDGEPSSKALIRQVNDGKVTSNLSRTIELAVQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01866 233 MobiDBLite consensus disorder prediction 81 160 - -
Vifa1g01866 233 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vifa1g01866 233 MobiDBLite consensus disorder prediction 192 208 - -
Vifa1g01866 233 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vifa1g01866 233 MobiDBLite consensus disorder prediction 87 123 - -
Vifa1g01866 233 MobiDBLite consensus disorder prediction 192 214 - -
Vifa1g01866 233 MobiDBLite consensus disorder prediction 126 149 - -
Vifa1g01866 233 CDD Bbox1_BBX-like 5 46 - -
Vifa1g01866 233 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01866 Vifa-Chr1 303011249 303012031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01866 1 138 C2C2-CO-like Transcription Factor Family AT4G27310 42.683 4.10e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01866 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01866 - - mtr:11417549 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01866 1 303011249 303012031 Vifa1g01866 1 303011249 303012031 ECH