Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01860 ATGCATAACATAATCCCCCACCTTCATCAATACTCCCTTCCATCTCTATCATACCCTCCACCTCAACCATCACAGCATCCGTTGCTTTCTCTAGACCCACTTCCTCAAAACTGTGGGCATGGACATGGGCCTGGACTCCTTGTCTCGAAATCAGAGGATATTAACAGGCCCATGGACTTTGTCGGCTCTAGGATTGGGCTTAACCTTGGTGGTCGTACTTACTTCTCCTCTTCCGAAGATGACTTCGTGAGCCGACTCTACCGCCGGTCTAGACAGCCTGAACCGGGTTCACACGGGTCTTCCAACTCGCCTAGGTGCCAGGCCGAAGGATGCAATGCTGATCTATCTCAGGCGAAGCACTACCACCGCCGACATAAGGTTTGTGAGTTTCACTCCAAGGCAGCCACCGTCATCGTCGCTGGGTTAACTCAGCAATTCTGCCAGCAATGCAGCAGGTTTCATCTTCTTTCTGAGTTTGATAATGGAAAACATAGCTGCAGAAAGAGATTAGCTGATCATAATCGTCGCAGACGAAAAACTCAACACCCAAATACTCAAGAAATTCACAAATCTCAAAACACTTTGGAAAATGCTGCTACAAGATCTCCGCCGGAGTCGGGGACTCAGTCTTCATCATCGGTGACGGTGGCGGTTTCTCCGCCGGATTATTTTCGAAAAAGGTCGTATCAAAGCCCAAGCACATCAATCATCTTCAAGCTCTTTGATTTAAGCAAGTTTGCCGAAACGCAAGGAACATACTCCATTCGCACGAAATTCCGAGGGGGAAAGGTTTGTTTCCTATCGTTGTTAGGCAGCCATGGCCAGCGAAGAGGAAGAGGAAGATTGTTTCCGTTGGGGCTCTGGAAAAGGTTATGTTTGTTTTGA 885 0.4825 MHNIIPHLHQYSLPSLSYPPPQPSQHPLLSLDPLPQNCGHGHGPGLLVSKSEDINRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQPEPGSHGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIVAGLTQQFCQQCSRFHLLSEFDNGKHSCRKRLADHNRRRRKTQHPNTQEIHKSQNTLENAATRSPPESGTQSSSSVTVAVSPPDYFRKRSYQSPSTSIIFKLFDLSKFAETQGTYSIRTKFRGGKVCFLSLLGSHGQRRGRGRLFPLGLWKRLCLF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01860 294 MobiDBLite consensus disorder prediction 15 50 - -
Vifa1g01860 294 Gene3D - 96 167 IPR036893 GO:0003677|GO:0005634
Vifa1g01860 294 Pfam SBP domain 106 179 IPR004333 GO:0003677
Vifa1g01860 294 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Vifa1g01860 294 MobiDBLite consensus disorder prediction 172 215 - -
Vifa1g01860 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 234 IPR044817 GO:0003677
Vifa1g01860 294 FunFam Squamosa promoter-binding-like protein 14 97 167 - -
Vifa1g01860 294 MobiDBLite consensus disorder prediction 186 215 - -
Vifa1g01860 294 SUPERFAMILY SBT domain 104 183 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01860 Vifa-Chr1 302541493 302542377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01860 45 153 SBP-box Gene Family AT1G02065 70.642 6.11e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g01860 SBP 5.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01860 - - gmx:100802206 332.028