Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01855 ATGTTCAATATGATGAAACCATGGTTCTGGCTTTCTCTTCTTAACCTCTTCTTCTTCTCTTTACACTTGTATACTTCTCTTGCAGCTTTAACAGCAATCTCTTCAAACCAATCTCTCTCTGGTGACCAAACTCTTATCTCTAAAGGAGGAATCTTTGAATTGGGTTTCTTCAAACCAGATCCTCTATGGCAGAGTTTTGATCATCCAGCAGATACATGGCTTCCCGGTGGCAAAATTAGGCTAGACAACAAAAGAAAGAAGCCTCAGTATCTTACTTCATGGAAGAATAAGGAAGATCCCGCAACGGGTCTTTTCTCTTTGGAACTAGACCCGAAAGGAACGACTTCATATATAATTCTTTGGAATAAGTCTGAAGAGTATTGGACTAGTGGAGCGTGGAATGGACATATTTTTAGTCTGGTTCCTGAAATGAGGTTAAATTATATCTACAATTTTTCGTTTGTATCAAACGAGAATGAGAGCTATTTCACTTACTCCATGTATAACCCTTCCATTATATCGCGATTTGTGATGGATATATCCGGGCAGATTAAGCAATTATCATGGTTGGAAAGTATCAAACAGTGGAACCTGTTTTGGTCGCAGCCAAGAGCACAGTGTGAGGTTTATGCTTTCTGCGGTGCGTTTGGAAGCTGTACTGAGAACTCGAAGCCATATTGTAATTGTTTGAGTGGTTTTGAGCCAAAGTCACAGTCTGATTGGGATCTGGAGGATCACTCAGGTGGGTGTATGAGAAAAACAAGGTTGCAATGTGAGAGTTCTGGTGACTCTAATGGGGTAAAAGACAGGTTTCGTCCAATCCCAAACATGGCATTGCCTAAACATGCACAATCGGTGAGATCAGAGAATGCAGAAGAATGTGAATCAATATGCTTGAACAGCTGCTCGTGTTCCGCTTATTCGTATGACAGTAATGGATGTTCAGTTTGGATTAAAGACCTACTGAATCTGCAACAGTTTTCTTCAGATGACAGCAGTGGAAACACTTTGTATCTAAAACTTGCAGCATCAGAATTTAGTGATGCTAAAAACAATAACAGGTTGATTATTGGTATTGCAGTAGGTGCTGTAGTTGGCGTAGGGATTCTCTTGGCTGTTCTTCTGATTGTTGTGGTTAGGCGAAGAAAGCGAACGGTTGGAACAGGTAAGCCTGTTGAGGGTTCGTTGGTGGCATTTGGCTACAGAGATATGCAAAATGCAACTAAGAATTTCTCTGAGAAATTGGGAGGAGGCGGATTCGGTTCTGTATTCAAAGGAACATTGGCTGATTCAAGTTTAGTGGCAGTGAAGAAGTTGGAAAGTGTTAGCCAAGGAGAGAAGCAGTTCAGAACAGAAGTGAGTACAATAGGAACAGTGCAACATGTTAACCTTGTTCGACTCCGAGGATTCTGTTCGGAAGGTACTAAACGGATGCTGGTTTATGATTACATGCCAAATGGTTCCTTGGATTTCCATTTGTTCATGAAGAAGGATACTTCAGTGCTTTTGAACTGGAAAATGAGATACCAAATAACTCTTGGAATCGCAAGGGGATTGACTTATCTCCACGAAAAGTGCCGAGACTGTATCATACACTGTGACATAAAGCCAGAAAACATTCTCCTAGACACCGATTTTTGTCCAAAAGTTGCGGACTTTGGCCTAGCTAAGCTAGTTGGGCGAGATTTCAGCAGGGTCCTAACAACCATGAGAGGAACAAGAGGCTATCTTGCTCCAGAGTGGATCTCTGGGGTGGCCATTACAGCCAAAGCCGATGTTTACAGTTATGGAATGATGCTTTTCGAGGTTGTATCAGGTAAGAGAAACTCTGATTCATCAGAAGACGGTCAGTTTACTTTCTTTCCTACCTTAGCTGCAAAAGTAGTTATTGAAGGTGGCAGTGTGATCACCCTATTAGATCCTAGGTTGGAGGGAAATGGGGACATTGAAGAAGTTGCGCGAATAATAAAAGTGGCGTCTTGGTGTGTCCAAGATAATGAAAATGAAAGGCCAACAATGGGTCAGGTAGTTCAAATTCTTGAAGGGATTTTGGAAGTGAGCTTGCCTCCGATTCCAAGATCTCTTCAAATGTTGGTTGATAATCATGAGAACGTGGTTTTCTACACTGATTCTAGCTCAACTCAAAGTTCACAGGTTAAGAGTAACATCTCAACAAGTTCTCAGGTCAAAAGCAATATATCATTGACGAGCTCTAATTTATCGGCAGAAAATTAG 2235 0.4139 MFNMMKPWFWLSLLNLFFFSLHLYTSLAALTAISSNQSLSGDQTLISKGGIFELGFFKPDPLWQSFDHPADTWLPGGKIRLDNKRKKPQYLTSWKNKEDPATGLFSLELDPKGTTSYIILWNKSEEYWTSGAWNGHIFSLVPEMRLNYIYNFSFVSNENESYFTYSMYNPSIISRFVMDISGQIKQLSWLESIKQWNLFWSQPRAQCEVYAFCGAFGSCTENSKPYCNCLSGFEPKSQSDWDLEDHSGGCMRKTRLQCESSGDSNGVKDRFRPIPNMALPKHAQSVRSENAEECESICLNSCSCSAYSYDSNGCSVWIKDLLNLQQFSSDDSSGNTLYLKLAASEFSDAKNNNRLIIGIAVGAVVGVGILLAVLLIVVVRRRKRTVGTGKPVEGSLVAFGYRDMQNATKNFSEKLGGGGFGSVFKGTLADSSLVAVKKLESVSQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKRMLVYDYMPNGSLDFHLFMKKDTSVLLNWKMRYQITLGIARGLTYLHEKCRDCIIHCDIKPENILLDTDFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEVVSGKRNSDSSEDGQFTFFPTLAAKVVIEGGSVITLLDPRLEGNGDIEEVARIIKVASWCVQDNENERPTMGQVVQILEGILEVSLPPIPRSLQMLVDNHENVVFYTDSSSTQSSQVKSNISTSSQVKSNISLTSSNLSAEN 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01855 744 Pfam Protein kinase domain 412 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01855 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vifa1g01855 744 FunFam Serine/threonine-protein kinase 376 483 - -
Vifa1g01855 744 Gene3D Transferase(Phosphotransferase) domain 1 484 688 - -
Vifa1g01855 744 SUPERFAMILY Protein kinase-like (PK-like) 395 713 IPR011009 -
Vifa1g01855 744 PANTHER OS07G0415500 PROTEIN 62 692 - -
Vifa1g01855 744 Pfam D-mannose binding lectin 60 95 IPR001480 -
Vifa1g01855 744 PIRSF SRK 60 732 IPR024171 GO:0004674
Vifa1g01855 744 PIRSF SRK 1 61 IPR024171 GO:0004674
Vifa1g01855 744 CDD STKc_IRAK 415 683 - -
Vifa1g01855 744 CDD PAN_AP_plant 254 342 - -
Vifa1g01855 744 FunFam Serine/threonine-protein kinase 484 688 - -
Vifa1g01855 744 SUPERFAMILY alpha-D-mannose-specific plant lectins 50 134 IPR036426 -
Vifa1g01855 744 Gene3D Phosphorylase Kinase; domain 1 375 483 - -
Vifa1g01855 744 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Vifa1g01855 744 Pfam S-locus glycoprotein domain 128 237 IPR000858 GO:0048544
Vifa1g01855 744 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01855 744 ProSiteProfiles PAN/Apple domain profile. 258 342 IPR003609 -
Vifa1g01855 744 SMART ntp_6 266 341 IPR003609 -
Vifa1g01855 744 SMART serkin_6 409 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01855 744 Pfam PAN-like domain 267 323 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01855 Vifa-Chr1 301982253 301984757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01855 363 690 Receptor kinase-like Gene Family AT5G20050 40.608 1.30e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g01855 Pkinase 5.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01855 - - gmx:100810583 1136.71