Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01847 ATGGTGAGAAAAGGTACATGGACTCCTGAAGAAGACAACAAGTTAATTGCTTATGTAACTAGATATGGCTCTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGGTGTGGGAAGAGTTGTAGACTAAGGTGGTTGAACTATCTAAGACCAGATGTCAAAAGAGGAAACTTTACACAACAAGAAGAAGATACTATCATCAAACTTCATCAAAAACTTGGTAATAGATGGATTGTGATTGCTGCAAATTTACCGGGAAGAACAGATAATGAGATAAAGAATCATTGGCACACCAACTTGAAAAAGCGTTTAATAAAGAATAATAATTCAGACGCTAATGATGGAACAGGAAACTCCAAAGACACAAATTCAGATAACCCTGCAATGGAACAAGACAACACAGTTGAAGGAGTGTTAGAGAAAAATAGTGGCCCCAATATTACAAGTCCATTGTCTTCAATCCCATCTTCAAGTGGAACAATGGATACTCCAACAACCACAGAAATATCATATGAAAATTATGTTCTTGACGAGCTTCCTTTAATGGATGCATTTTTGAATGATAATTTCTGGACAGAACCATATATCATGGACGGTTCATATGTCCCTCCAAATGAAGAAACTACATTATTACCTATCTGGTGTGAAGATGAATACTTCAGTGCTATGTACGATGAACAACTTTGGAGCCATCAACAATAA 708 0.3658 MVRKGTWTPEEDNKLIAYVTRYGSWNWRQLPKFAGLERCGKSCRLRWLNYLRPDVKRGNFTQQEEDTIIKLHQKLGNRWIVIAANLPGRTDNEIKNHWHTNLKKRLIKNNNSDANDGTGNSKDTNSDNPAMEQDNTVEGVLEKNSGPNITSPLSSIPSSSGTMDTPTTTEISYENYVLDELPLMDAFLNDNFWTEPYIMDGSYVPPNEETTLLPIWCEDEYFSAMYDEQLWSHQQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01847 235 Gene3D - 4 56 - -
Vifa1g01847 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Vifa1g01847 235 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Vifa1g01847 235 PANTHER MYB DOMAIN PROTEIN 55 2 153 - -
Vifa1g01847 235 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Vifa1g01847 235 FunFam MYB-related transcription factor 3 56 - -
Vifa1g01847 235 Pfam Myb-like DNA-binding domain 4 51 IPR001005 -
Vifa1g01847 235 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
Vifa1g01847 235 SUPERFAMILY Homeodomain-like 3 98 IPR009057 -
Vifa1g01847 235 CDD SANT 59 102 IPR001005 -
Vifa1g01847 235 Gene3D - 58 133 - -
Vifa1g01847 235 MobiDBLite consensus disorder prediction 105 167 - -
Vifa1g01847 235 CDD SANT 6 51 IPR001005 -
Vifa1g01847 235 SMART sant 56 104 IPR001005 -
Vifa1g01847 235 SMART sant 3 53 IPR001005 -
Vifa1g01847 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 106 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01847 Vifa-Chr1 301270420 301272422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01847 2 202 MYB Transcription Factor Family AT2G31180 50.980 1.23e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01847 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01847 K09422 - mtr:11411430 261.536