Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01843 ATGGGGAGAAGGCCTTGTTGTGACAAAACTGGATTGAGAAAAGGTACATGGACTCCTGAAGAAGACAACAAGTTAATTGCTTATGTAACTAGATATGGCTCTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGGTGTGGGAAGAGTTGTAGACTAAGGTGGTTGAACTATCTAAGACCAGATGTCAAAAGAGGAAACTTTACTCAACAAGAAGAAGATACTATCATCAAACTTCATCAAAAACTTGGTAATAGATGGATTGTGATTGCTGCAAATTTACCGGGAAGAACAGATAATGAGATAAAGAATCATTGGCACACCAACTTGAAAAAGCGTTTAATAAAGAATAATAACTCAGACGCTAATGATGGAACAGGAAACTCCAAAGACACAAATTCAGATAACCCTGCAATGGAAGAAGACAACACAGTTGAAGGAGTGTTGGAGAAAAATAGCGGCCCCAATATTACAAGTCCATTGTCTTCAATCCCATCTTCAAGTGGAACAATGGATACTCCAACAACCACAGAAATATCATATGAAAATTATGTTCTTGACGAGCTTCCTTTAATGGATGCATACATGGATGTTTTGAATGATAATTTCTGGACAGAACCATATATCATGGACGGTTCATATGTCCCTCCAAATGAAGAAACTACATTATTACCTATCTGGTGTGAAGATGAATACTTCAGTGCTATGTACGATGAACAACTTTGGAGCCATCAACAATAA 747 0.3748 MGRRPCCDKTGLRKGTWTPEEDNKLIAYVTRYGSWNWRQLPKFAGLERCGKSCRLRWLNYLRPDVKRGNFTQQEEDTIIKLHQKLGNRWIVIAANLPGRTDNEIKNHWHTNLKKRLIKNNNSDANDGTGNSKDTNSDNPAMEEDNTVEGVLEKNSGPNITSPLSSIPSSSGTMDTPTTTEISYENYVLDELPLMDAYMDVLNDNFWTEPYIMDGSYVPPNEETTLLPIWCEDEYFSAMYDEQLWSHQQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01843 248 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g01843 248 CDD SANT 69 112 IPR001005 -
Vifa1g01843 248 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g01843 248 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa1g01843 248 Gene3D - 7 66 - -
Vifa1g01843 248 CDD SANT 16 61 IPR001005 -
Vifa1g01843 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa1g01843 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa1g01843 248 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa1g01843 248 MobiDBLite consensus disorder prediction 116 142 - -
Vifa1g01843 248 Gene3D - 68 143 - -
Vifa1g01843 248 SMART sant 66 114 IPR001005 -
Vifa1g01843 248 SMART sant 13 63 IPR001005 -
Vifa1g01843 248 MobiDBLite consensus disorder prediction 151 177 - -
Vifa1g01843 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 174 - -
Vifa1g01843 248 MobiDBLite consensus disorder prediction 116 177 - -
Vifa1g01843 248 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g01843 248 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01843 Vifa-Chr1 300565826 300567871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01843 1 215 MYB Transcription Factor Family AT2G31180 52.093 3.39e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01843 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01843 K09422 - mtr:11411430 280.026