Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01841 ATGGAGTTTAACCTTGAAAACCCTCTTGAAAACTTTCATGACCTTCCTAATTCTCAATGTGTTTCTTCCCTTTTTCTCATTGAATCTGACCATATCCCTCCTCCAAGTTACTTTCAAACCCTCAAATCAAATGAGTTTGATACCTCACTTAGAACTGATTTCATCTCTTTGATCTCACAGTTGTCATGCAACTTTGATCCAGTTGTGACTTACTTAGCTATCAACTATTTGGATCGCTTCCTAGCAAACCAAGGAATATTGCAGCCAAAACCATGGGCCAACAAACTTCTTGCAGTAACATGTTTTTCACTAGCAATAAAAATGTTGAAAACAGAATACTCTGCCACTGATGTTCAGGGTCTTCTTAATCATGATGATGGTGGTTTCATTTTTGAGACACAAACAATAAAAAGAATGGAAGCACTTGTGTTAGGAGCATTACATTGGAGAATGCGTTCCATTACTCCATTCTCTTTCATTCCTTACTTCACCAATTTGTTTCATCTTGATGATATAACATTAAAGGTTCTCAAAGATAGAGCTTCACAAATTATATTCAAGTCACAAAAAGATGTAAAGGTTTTGGAATTCAAGCCATCTATAGTTGCTGCTTCATCCCTTCTTTATGCTTCACATGAATTGTTTCCTTTTCAATATCCATGCTTATTGGGAACAATATCCAATTCTTCATATGTAAATAAAGAAAATGTGATGCAGTGCTATAATGTGATACAAGATATATCTAAGGAAGAGTACGAATCAATGTTTAATGCAAATTCAAGTTCTGGCACACCAGTTAATGTGTTAGACGAAAATTTTCTAAGTTTGGAAAGTGAAAAAACCAATGGAACAAATCTGGATCCAACTACTATGATACAAGAGAAGCATTTCAAAAGAAGGAAAATTTAA 909 0.3443 MEFNLENPLENFHDLPNSQCVSSLFLIESDHIPPPSYFQTLKSNEFDTSLRTDFISLISQLSCNFDPVVTYLAINYLDRFLANQGILQPKPWANKLLAVTCFSLAIKMLKTEYSATDVQGLLNHDDGGFIFETQTIKRMEALVLGALHWRMRSITPFSFIPYFTNLFHLDDITLKVLKDRASQIIFKSQKDVKVLEFKPSIVAASSLLYASHELFPFQYPCLLGTISNSSYVNKENVMQCYNVIQDISKEEYESMFNANSSSGTPVNVLDENFLSLESEKTNGTNLDPTTMIQEKHFKRRKI 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01841 302 FunFam D6-type cyclin 150 242 - -
Vifa1g01841 302 SMART cyclin_7 52 145 IPR013763 -
Vifa1g01841 302 SMART cyclin_7 158 246 IPR013763 -
Vifa1g01841 302 PANTHER CYCLINS 30 253 IPR039361 -
Vifa1g01841 302 FunFam D6-type cyclin 34 149 - -
Vifa1g01841 302 Pfam Cyclin, N-terminal domain 27 151 IPR006671 -
Vifa1g01841 302 Gene3D - 34 152 - -
Vifa1g01841 302 SUPERFAMILY Cyclin-like 136 247 IPR036915 -
Vifa1g01841 302 CDD CYCLIN_AtCycD-like_rpt2 154 244 - -
Vifa1g01841 302 SMART Cyclin_C_2 154 268 IPR004367 -
Vifa1g01841 302 Pfam Cyclin, C-terminal domain 154 251 IPR004367 -
Vifa1g01841 302 SUPERFAMILY Cyclin-like 19 151 IPR036915 -
Vifa1g01841 302 Gene3D - 23 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01841 Vifa-Chr1 299289902 299291492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01841 1 301 Core Cell Cycle Gene Families AT4G03270 44.444 4.83e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01841 K18812 - gmx:100799951 457.603