Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01840 ATGGAGTTTAACCTTGAAAACCCTCTTGAAAACTTTCATGACCTTCCTAATTCTCAATGTGTTTCTTCCCTTTTTCTCATTGAATCTGACCATATCCCTCCTCCAAGTTACTTTCAAACCCTCAAATCAAATGAGTTTGATACCTCACTTAGAACTGATTTCATCTCTTTGATCTCACAGTTGTCATGCAACTTTGATCCAGTTGTGACTTACTTAGCTATCAACTATTTGGATCGCTTCCTAGCAAACCAAGGAATATTGCAGCCAAAACCATGGGCCAACAAACTTCTTGCAGTAACATGTTTTTCACTAGCAATAAAAATGTTGAAAACAGAATACTCTGCCACTGATGTTCAGGGTCTTCTTAATCATGATGATGGTGGTTTCATTTTTGAGACACAAACAATAAAAAGAATGGAAGCACTTGTGTTAGGAGCATTACATTGGAGAATGCGTTCCATTACTCCATTCTCTTTCATTCCTTACTTCACCAATTTGTTTCATCTTGATGATATAACATTAAAGGTTCTCAAAGATAGAGCTTCACAAATTATATTCAAGTCACAAAAAGATGTAAAGGTTTTGGAATTCAAGCCATCTATAGTTGCTGCTTCATCCCTTCTTTATGCTTCACATGAATTGTTTCCTTTTCAATATCCATGCTTATTGGGAACAATATCCAATTCTTCATATGAAAATGTGATGCAGTGCTATAATGTGATACAAGATATATCTAAGGAAGAGTACGAATCAATGTTTAATGCAAATTCAAGTTCTGGCACACCAGTTAATGTGTTAGACGAAAATTTTCTAAGTTTGGAAAGTGAAAAAACCAATGGAACAAATCTGGATCCAACTACTATGATACAAGAGAAGCATTTCAAAAGAAGGAAAATTTAA 900 0.3467 MEFNLENPLENFHDLPNSQCVSSLFLIESDHIPPPSYFQTLKSNEFDTSLRTDFISLISQLSCNFDPVVTYLAINYLDRFLANQGILQPKPWANKLLAVTCFSLAIKMLKTEYSATDVQGLLNHDDGGFIFETQTIKRMEALVLGALHWRMRSITPFSFIPYFTNLFHLDDITLKVLKDRASQIIFKSQKDVKVLEFKPSIVAASSLLYASHELFPFQYPCLLGTISNSSYENVMQCYNVIQDISKEEYESMFNANSSSGTPVNVLDENFLSLESEKTNGTNLDPTTMIQEKHFKRRKI 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01840 299 FunFam D6-type cyclin 34 149 - -
Vifa1g01840 299 CDD CYCLIN_AtCycD-like_rpt2 154 241 - -
Vifa1g01840 299 Gene3D - 23 239 - -
Vifa1g01840 299 PANTHER CYCLINS 30 250 IPR039361 -
Vifa1g01840 299 FunFam D6-type cyclin 150 239 - -
Vifa1g01840 299 Gene3D - 34 152 - -
Vifa1g01840 299 SMART cyclin_7 52 145 IPR013763 -
Vifa1g01840 299 SMART cyclin_7 158 243 IPR013763 -
Vifa1g01840 299 SUPERFAMILY Cyclin-like 136 244 IPR036915 -
Vifa1g01840 299 Pfam Cyclin, C-terminal domain 154 248 IPR004367 -
Vifa1g01840 299 SUPERFAMILY Cyclin-like 19 151 IPR036915 -
Vifa1g01840 299 Pfam Cyclin, N-terminal domain 27 151 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01840 Vifa-Chr1 299289902 299291492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01840 1 298 Core Cell Cycle Gene Families AT4G03270 43.810 4.47e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01840 K18812 - gmx:100799951 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01840 1 299289902 299291492 Vifa1g01840 1 299289902 299291492 ECH