Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01838 ATGACGAAGCTCAACGTCATCTCCATTGTCACCCTCTTATTCCTTCTTCTCACTTCAACACAAGCCTCACTCCCCGGCGTCTATCCCGGAGGAGCATGGCAAACCGCCCACGCCACCTTCTACGGCGGAAACGACGCCTCCGGAACAATGGGAGGCGCGTGTGGTTACGGGAATTTATACAGCCAAGGCTACGGCGTCAACACGGCGGCATTAAGCACTGCACTATTCAACAACGGCTTAAGCTGCGGCGCGTGTTTTGAGATAAAGTGTGCAAATGATCCTAGCTGGTGCCACGCTGGCAGCCCTTCAATATTAGTTACTGCAACAAATTTCTGTCCACCAAATTACGCTTTACCAAGTGATAATGGTGGTTGGTGTAATCCTCCTCGTCCACACTTCGATCTCGCTATGCCTATGTTCCTCAAAATCGCTCAGTATCGTGCCGGCATTGTTCCCGTCTCTTACCGCCGGGTATCTTGTAGGAAGCAAGGAGGGATAAGATTTACGATCAATGGTTTTCGTTACTTTAATTTGGTTTTAATCACCAACGTTGCGGGTGCAGGGGATATCGTGAGTACTAGTGTGAAAGGTTCGAAAACTGGTTGGTTGAGTATGAGTCGGAACTGGGGGCAAAATTGGCAATCAAATGTAGTTTTGGTTGGTCAGACACTTTCTTTTAGGGTGACAGCAAGTGACAAACGCACTTCTACTTCTTGGAATATTGCTCCTTCTAATTGGCAGTTTGGTCAAACTTTCCATGGCAAGAATTTTCAAGTCTAG 780 0.4769 MTKLNVISIVTLLFLLLTSTQASLPGVYPGGAWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPSWCHAGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVSCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVSTSVKGSKTGWLSMSRNWGQNWQSNVVLVGQTLSFRVTASDKRTSTSWNIAPSNWQFGQTFHGKNFQV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01838 259 Gene3D - 21 161 IPR036908 -
Vifa1g01838 259 FunFam Expansin 165 257 - -
Vifa1g01838 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Vifa1g01838 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Vifa1g01838 259 PANTHER EXPANSIN-A15 14 257 IPR002963 GO:0009664
Vifa1g01838 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Vifa1g01838 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Vifa1g01838 259 Gene3D - 165 258 IPR036749 -
Vifa1g01838 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Vifa1g01838 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Vifa1g01838 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vifa1g01838 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Vifa1g01838 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vifa1g01838 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vifa1g01838 259 FunFam Expansin 22 161 - -
Vifa1g01838 259 CDD DPBB_EXPA_N 33 160 - -
Vifa1g01838 259 SMART dpbb_1 68 155 IPR007112 -
Vifa1g01838 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vifa1g01838 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Vifa1g01838 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Vifa1g01838 259 Pfam Lytic transglycolase 68 155 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01838 Vifa-Chr1 298525338 298526305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01838 7 259 Expansin Gene Family AT2G39700 82.609 7.95e-162 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01838 - - gmx:100803242 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00990 5 293987840 293989821 Vifa1g01838 1 298525338 298526305 ECH
Vifa1g01838 1 298525338 298526305 Vifa1g01838 1 298525338 298526305 ECH