Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01836 ATGGGTAAGAAAAACAAAACAAGGAACGAAAATGGCGACGGCACCTTGAAACAAAGCCCCTTGACTCTCTTTGTTTCCAACTTACCCTACTCCTTTACAAATCCTCAGCTTGAGGAAACTTTCAGTGAAGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAAAAAGGGTCTACTCAACACCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGCTGACGCTAACAGTGCCATTGAGCTGAAGAACGGTTCATTAGTTGGTGGCCGAAAAATTGCAGTGAAGCACGCAATGCCCCGTCCTCCTCGTGAAAATAGAAGATTGAAACCAGATCAAGAGGGCAAGGAAGATGATCTCACAGAGTCAAAAATTGTTGATAAAGACAGTGAATTACCTGTTGCAGAGAAGCCTGTTCCAGTTCCAAAGGAAGAAGAAGTGATAGTTTTGAGTAAACAAAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCACTTTGTAATAATGTAGCAGATGAGGGGGGTGGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTGGGTGGTCTCATGAATTCTGCCATGGCTGAAGATGTTCACCGTCAAGCCAAGGAAATTGGAACTGTGTGCTCTATTAAGTCTCTCTCAAGGAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGCTGTACTTCAGATGCTTCAGCTGTACTATATACTAGTGTAAAATCAGCTCGTGCTGCTGTTGCAACATTGCATAAAAAAGAGATTGGAGGTGGAACTGTTTGGGCACGCCAACTTGGTGGGGAGGGATCCAAGACTCAAAAATGGAAGCTTATTGTTAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGTGATGTGTTTAAATCTGCGGGGCCTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACGGGTCTTTCAAAGGGTTTCGCATTTGTAAAGTTTACCTGCAAGCAAGATGCTGAAAATGCCATTCGAAAGCTCAATGGATCGAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCGAAAAAGATATTTAGTAGTGATGGCATTGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACGGATGAAGATGGTAGTACTACTACTGATGACGATGTTGAGGGTACCGACAATCAATCTGATCAAGGAGATGATAGTGATATTGATGGTTTAGTGGAGGAAGATGTTCCTTCTGAAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAATGATTTGATTACATCCTCCTCTGCCAGAGATGCACCTGTAAATACGGATTCCATTTGTTCCGAAGAAAATAAGGAGCCAGAACCTGAGGAAACTGTCAAGGATGCGGATAGTAAAGCATCTAAAGAGTCTGACAAAGTTTCAGTTACTTGTAAGCCTGAAACTTCCAGCAGGTTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACAATTTTTATAAATAATCTTCCCTTTGAATGCGAGACCGAAGAAGTGAAGCAACGATTTTCTGCATTTGGAGTAGTAGAATATTTTGCTCCTGTTCTCCACCCATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACCGTTGAAGCAGCTAATGCTGCAATTTCAGCTGCCAATGCTGCTTCTGGGGTGGGTATTTTAGTGAAGGGTAGACAATTAAAAGTTTTGAAAGCTCTGGACAAGAAAGCAGCTCACGAAAAGGAACAGGAGAAAGAGAAAAAAGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGGACTCCAGCTGCTGAAGGAGTTTCAGCTAGTGATATGGCAAAACGCAAAGATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCCAAGTCAAAGACTGAGAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGACAGATAAAGCTTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAGTATTCCCGTGGAGTTGCCTTTCTTGAATTTTCAGAACACCAGCACGCCCTTGTTGCATTGAGAGTTCTTAACAATAATCCTGAAACGTTTGGTCCTGAACATCGGCCGATCGTGGAGTTTGCCCTTGATAATGTTCAGACATTGAAGCTTCGGAAGGAAAAGCTGCAATATCAGCAGCAGGCTCCTTATGATGACAACAACAGAAACGAAAATGATAAACCCGACAACGCAGAAGGAGGTTACAGACATGGAACGGACAGAAAACGAAAATCTCAAGAGCACGAGAAACCTGCAAATGAGAGTGAACAAGGTGCTGAAGTGACAAATGGAAAATCTCCTCAAGGAGGCAAATTCAAAAGACAGAAAGACAACCCCAAGAATACAAATACGGAAGTGTTATCATCCAAAGGAAATCCAAAAGATTCTTTGGCCAGGAAGTTAGCGAATAACCAAGATGGCCGGAATCACAGTAAAAACACTGCCATTGACAGTAGTATTGGAAAAAAGTCAGGAAAGAAAGATGACGTGGTATATGGAAAGAGGAAGATGCAGAACCAAGAACAGGCAGGGGAACAGGTTACTAGGAAAAGGGCAAAGAAGAATAAAGATTTAGTAGGAAAGGACACAGTAGATAACCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCAAACAAGGGCTCCCAAGGAAATGATGGTGAGAAAAGACAGTCTAAACAGCTTAGAAAATGGTTCCAAACATAA 2865 0.4188 MGKKNKTRNENGDGTLKQSPLTLFVSNLPYSFTNPQLEETFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEADANSAIELKNGSLVGGRKIAVKHAMPRPPRENRRLKPDQEGKEDDLTESKIVDKDSELPVAEKPVPVPKEEEVIVLSKQKNSRKPVEIKKAALCNNVADEGGGSEKQRVARTVILGGLMNSAMAEDVHRQAKEIGTVCSIKSLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARAAVATLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEISDVFKSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGSKFGSRLIAVDWAVPKKIFSSDGIDAPASEEGQQKVTDEDGSTTTDDDVEGTDNQSDQGDDSDIDGLVEEDVPSEDDFDKEADIARKVLNDLITSSSARDAPVNTDSICSEENKEPEPEETVKDADSKASKESDKVSVTCKPETSSRLSNPKETEDDLQRTIFINNLPFECETEEVKQRFSAFGVVEYFAPVLHPLTKRPRGTGFLKFKTVEAANAAISAANAASGVGILVKGRQLKVLKALDKKAAHEKEQEKEKKEVHDHRNLYLAKEGLILEGTPAAEGVSASDMAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSKTEKQLKKLCIDAVISRATKQKPVIRQIKLLKDGRKGKATQEQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKEKLQYQQQAPYDDNNRNENDKPDNAEGGYRHGTDRKRKSQEHEKPANESEQGAEVTNGKSPQGGKFKRQKDNPKNTNTEVLSSKGNPKDSLARKLANNQDGRNHSKNTAIDSSIGKKSGKKDDVVYGKRKMQNQEQAGEQVTRKRAKKNKDLVGKDTVDNLDMLIEQYRSKFSNKGSQGNDGEKRQSKQLRKWFQT 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01836 954 MobiDBLite consensus disorder prediction 94 128 - -
Vifa1g01836 954 SUPERFAMILY RNA-binding domain, RBD 501 731 IPR035979 GO:0003676
Vifa1g01836 954 CDD RRM2_RBM28_like 279 355 - -
Vifa1g01836 954 SUPERFAMILY RNA-binding domain, RBD 20 264 IPR035979 GO:0003676
Vifa1g01836 954 Gene3D - 265 401 IPR012677 -
Vifa1g01836 954 MobiDBLite consensus disorder prediction 772 807 - -
Vifa1g01836 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Vifa1g01836 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Vifa1g01836 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 563 IPR000504 GO:0003723
Vifa1g01836 954 MobiDBLite consensus disorder prediction 451 479 - -
Vifa1g01836 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 584 IPR000504 GO:0003723
Vifa1g01836 954 Gene3D - 652 747 IPR012677 -
Vifa1g01836 954 MobiDBLite consensus disorder prediction 440 495 - -
Vifa1g01836 954 FunFam RNA-binding motif protein 28 652 747 - -
Vifa1g01836 954 SUPERFAMILY RNA-binding domain, RBD 274 358 IPR035979 GO:0003676
Vifa1g01836 954 MobiDBLite consensus disorder prediction 364 421 - -
Vifa1g01836 954 MobiDBLite consensus disorder prediction 384 419 - -
Vifa1g01836 954 MobiDBLite consensus disorder prediction 97 128 - -
Vifa1g01836 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Vifa1g01836 954 MobiDBLite consensus disorder prediction 898 915 - -
Vifa1g01836 954 MobiDBLite consensus disorder prediction 873 887 - -
Vifa1g01836 954 CDD RRM1_RBM28_like 22 100 - -
Vifa1g01836 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 766 IPR000504 GO:0003723
Vifa1g01836 954 MobiDBLite consensus disorder prediction 850 872 - -
Vifa1g01836 954 Gene3D - 435 601 IPR012677 -
Vifa1g01836 954 Gene3D - 2 113 IPR012677 -
Vifa1g01836 954 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 953 - -
Vifa1g01836 954 Coils Coil 744 764 - -
Vifa1g01836 954 MobiDBLite consensus disorder prediction 764 954 - -
Vifa1g01836 954 CDD RRM4_RBM28_like 653 750 - -
Vifa1g01836 954 Coils Coil 586 606 - -
Vifa1g01836 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 356 IPR000504 GO:0003723
Vifa1g01836 954 SMART rrm1_1 654 745 IPR000504 GO:0003723
Vifa1g01836 954 SMART rrm1_1 502 580 IPR000504 GO:0003723
Vifa1g01836 954 SMART rrm1_1 22 95 IPR000504 GO:0003723
Vifa1g01836 954 SMART rrm1_1 279 352 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01836 Vifa-Chr1 298424671 298433079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01836 282 357 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 2.84e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01836 K14573 - gmx:100794821 1233.01