Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01829 ATGGCATATCCTTCAAAGTTTGAGCATAAGTTTATTGAGCAAACTCTAATTGTTCCATCATTAACATCAACAATTTCTCTTCCTCTCACATTCCTTGATTTACCTTTAGCAGGTCCAATTTATGTTAAACGTCAATTTTTCTATCATTTTCCTTATTCACCCGATTATTTTTACAAAACAAAACTTCCGTCTCTCAAACACTCTCTTTCTCTTACTCTTCAATATTTTTTCCCTCTCGCGGGAAATCTCATATCTCCACCACCACCAAATAAACCATATATCATCTGCACGCAAAAAGACTCTGTTGTCTTTACCATCATTGAATCTTCCGCAAATTTCAACCATCTTTCGTCCAATAACCACCCCAAAAATATCAAAGACTTTAATCACCTTGTTCCGAAATTAACCCAAAAAACAACCCTAGATGATAATGATCATATTGAAAATAACACCTTCATATTCCCTTTGTTGACTTTACAAGTCTCGGTTTTCCCTAACCACGGTCTTTGCATCGCAATCACATATTGTCACGTTATGGATGATCATTGTTGTAATCATTTCATGAAAACTTGGTCTTCTATCCATGGAAATTGTGATGTAAACTTGAAGCCAACACCTTGTTTTGATAGAAATATTTTGAGGGACCCAAAAGGGCTTGAGAATGTTTTCTTAGGAGACTATTTTGAAGAAAGAAAAACATGGAAAAATAAATCTACTACTCAAGCTCAAGACTATGTTAAAGCAACTATTGTTTTTGGAAAAGAAGAAATCGAGAGAATGAAAAGAAGGGTACTCAATCAATGGAAGAAAATTGATCATGAGACTAAACCGCCGCAATTTTTATCTAAATTTGTTGTAACTTGTGGATTTGTATGGGCTAGTTTGGTTAAAACAAGATATAGAAATGATAGAGATGATGAAAAGGAAGAGTATTTTCGTTTTGCAGGTGATTGTAGAGATAGACTTGGATACACAATACCAGAAGGTTATTTTGGAAACTGTTTAACACTATGTCATGCAACCGCGAAGAGAAAGGATATGAAAGGAGAATATGGTTTTGTGAATGCGGTTAAGGTAATTGAAAGGGCGGTAAGGGAGATGAAAATCGAACCTTTTAAAGACGCGGCCGAATGGAGGGAGACGTTTAAGAAAATGTATGAGTTTGGAAGTGTGTTGTTGGTAACAGGATCACCTAAGTTTAATGTTTATGAGATTGATTTTGGATTTGGAAAACCAGTTAAAGTTGAGATGATGCATTCTTTTAAATGTATGTCTATTGCTGAAAGTGGAGATAGAGAAGGTGGACTTGAGGTTGGGTTAGTATTTAAAAGTGGAGAATTTGAAAATTTTTGTTCAACCATTGAGCAAGGACTTGAAGCTTGTAAATTCTAA 1392 0.3491 MAYPSKFEHKFIEQTLIVPSLTSTISLPLTFLDLPLAGPIYVKRQFFYHFPYSPDYFYKTKLPSLKHSLSLTLQYFFPLAGNLISPPPPNKPYIICTQKDSVVFTIIESSANFNHLSSNNHPKNIKDFNHLVPKLTQKTTLDDNDHIENNTFIFPLLTLQVSVFPNHGLCIAITYCHVMDDHCCNHFMKTWSSIHGNCDVNLKPTPCFDRNILRDPKGLENVFLGDYFEERKTWKNKSTTQAQDYVKATIVFGKEEIERMKRRVLNQWKKIDHETKPPQFLSKFVVTCGFVWASLVKTRYRNDRDDEKEEYFRFAGDCRDRLGYTIPEGYFGNCLTLCHATAKRKDMKGEYGFVNAVKVIERAVREMKIEPFKDAAEWRETFKKMYEFGSVLLVTGSPKFNVYEIDFGFGKPVKVEMMHSFKCMSIAESGDREGGLEVGLVFKSGEFENFCSTIEQGLEACKF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01829 463 Gene3D - 242 461 IPR023213 -
Vifa1g01829 463 Gene3D - 9 240 IPR023213 -
Vifa1g01829 463 Pfam Transferase family 11 454 - -
Vifa1g01829 463 PANTHER - 10 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01829 Vifa-Chr1 296300222 296301613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01829 13 450 Monolignol Biosynthesis Gene Families AT5G48930 21.681 1.19e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01829 - - tpra:123894642 741.88