Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01828 ATGATGAAGTTGATAGAACACATTCAAATCTCACCACCACCAAATTCACTTCCATCACCAACCACTCTCCCCCTCACTCTCTTTGACATTTCATGGTTCTACTGCCTTCCCCCAGTTCAACGCATCTTCTTCTACCGCTTTCCTCATCCAACTCATCACTTCCTTCGAACAACACTTCCCATTCTCAAACACTCTCTTTCTCTCACCCTCCAACACTTCTTCCCATTCTCCTCCAACCTCATCATCCCTCCTATTTCCGATAACCCCCCTTACATACGCTACCTCAACGGCGACTCTCTCTCCTTCACCGTCTCTGAATCCTCCGCAGACTTCAACCTCCTCATATCTGATTCACAAGACGCTCAAAACTGGCACCCTCTTGTTGCTAACCTACCTCCACCTCGTACCGAACCTAACCGTACAATTGCCATCCCTTTAATGGCTATTCAACTCACCCTTCTACCAAACTCCGGCTTCTCTATCTGCCTCACTTTCAAACACGTCGCTGCAGACGGAAAATCACTTCATCATTTCATGAAATATTGGGCCTATCTTTCAAAAGCCATAGCAAACAACGACAATAGTTTATCATCTCTACCTCTTGATCTTCCTTCCCATGAAAGAGACAAAGTTCTTAAACACCCTAAGGCTCCTAAGCTCATTTACCAACATGAAGATGCTTATAGTGATAGTTATGCTGACAAGGTACGAACTAGTTTAATATTGAGTCATGAACAAGTTCAGAAACTGAAGAAATGGTTTGTTGATAAATGTAAAGACACAACAAAACATATGTCAACTTTTGTTGTGACATGTTCCTTGATTTGGTTTTGTATGGTAAGATCAGAGAAAAACACAGGTGGTGATGGTGCTGTTGGTGATCTATGCAACTTCTTGTTTTTAGCAGATTGTCGCGATCGTCCTGAATATTCATTACCAAAAACCTATTTTGGAAATTGTCTTGCCTCTTATACTGTGGTTGTAAAGAGGGGCGAGTTGGTTGGAAAAGATGGTATTGTTGTGGCTGCAAATGCTATTGAAAGGAAGATAAGAGAATTCAAGAGTGATGCTTTGTTAGTAGATGAAGTGTTGATGCCTGATTATAGGGAATTATCAAAACCAGGTCTGTCTTTGGTAGTGGTTGCAGGTTCACCAAAACTTGCTATTTATGAGACTGATTTTGGTTGGGGGAAGCCTGTGAAATCTGATGCAGTTCATATTGATGCCTTTGGGTCGATTTCTCTTTCGGATTGTAGAGATGGTGGAGGTGGAATTGAGGTTGGTTTGGCTCTTGAAAGGTCTAGAATGGCTAATTTCATTGACATTTTTCAAGAACAACTTGATAATATTTGTAGCATGTGA 1362 0.4148 MMKLIEHIQISPPPNSLPSPTTLPLTLFDISWFYCLPPVQRIFFYRFPHPTHHFLRTTLPILKHSLSLTLQHFFPFSSNLIIPPISDNPPYIRYLNGDSLSFTVSESSADFNLLISDSQDAQNWHPLVANLPPPRTEPNRTIAIPLMAIQLTLLPNSGFSICLTFKHVAADGKSLHHFMKYWAYLSKAIANNDNSLSSLPLDLPSHERDKVLKHPKAPKLIYQHEDAYSDSYADKVRTSLILSHEQVQKLKKWFVDKCKDTTKHMSTFVVTCSLIWFCMVRSEKNTGGDGAVGDLCNFLFLADCRDRPEYSLPKTYFGNCLASYTVVVKRGELVGKDGIVVAANAIERKIREFKSDALLVDEVLMPDYRELSKPGLSLVVVAGSPKLAIYETDFGWGKPVKSDAVHIDAFGSISLSDCRDGGGGIEVGLALERSRMANFIDIFQEQLDNICSM 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01828 453 PANTHER - 2 448 - -
Vifa1g01828 453 Gene3D - 235 450 IPR023213 -
Vifa1g01828 453 Pfam Transferase family 19 441 - -
Vifa1g01828 453 Gene3D - 1 234 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01828 Vifa-Chr1 295871537 295872898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01828 46 439 Monolignol Biosynthesis Gene Families AT5G48930 23.898 1.06e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01828 - - tpra:123894645 641.343