Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01823 ATGACAATTGGGTTCATGGAAGTACATGTTCTCAAAGCAAAAGGCCTCAACACCACTTGTTTCTTTGGTGGAATGGAAGATCCTTATGTTTTGATACAATATGAAGGCCAAGAGCATAAGAGCACTGTTGCTAAAGGTAGAGGAAGAAATCATGTATGGGATGAGAAATTTATGTTCAAAGTAGATAATTTTGGATCAAAAGATAAACACAAAATCATTCTCAAGATAATGGACAAAGACACCTTTTCTACCGATGACTTCATGGGACAAACCATAATTTATGTGAAGGATTTGTTGACTCAAGGTGTAGAAAATGGAGTTTCTAAGCTACCACCTCTCAAGTATAGAGTTGTTCGTGCAGACCAATCTTATCGTGGAGAAGTTGATGTTGCCATTACTTTTACTCCCAAGGTAACATACATGACTAGTTAA 432 0.3681 MTIGFMEVHVLKAKGLNTTCFFGGMEDPYVLIQYEGQEHKSTVAKGRGRNHVWDEKFMFKVDNFGSKDKHKIILKIMDKDTFSTDDFMGQTIIYVKDLLTQGVENGVSKLPPLKYRVVRADQSYRGEVDVAITFTPKVTYMTS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01823 143 Gene3D C2 domain 3 137 IPR035892 -
Vifa1g01823 143 Pfam C2 domain 6 106 IPR000008 -
Vifa1g01823 143 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Vifa1g01823 143 PANTHER C2 DOMAIN-CONTAINING 3 137 - -
Vifa1g01823 143 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 138 IPR035892 -
Vifa1g01823 143 SMART C2_3c 5 107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01823 Vifa-Chr1 295740769 295741362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01823 3 106 C2H2 Transcription Factor Family AT4G21160 36.190 6.06e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01823 - - pvu:PHAVU_008G232700g 181.03