Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01822 ATGACAATTGGGTTCATGGAAGTACATGTTCTCAAAGCAAAAGGCCTCAACACCACTTGTTTCTTTGGTGGAATGGAAGATCCTTATGTTTTGATACAATATGAAGGCCAAGAGCATAAGAGCACTGTTGCTAAAGGTAGAGGAAGAAATCATGTATGGGATGAGAAATTTATGTTCAAAGTAGATAATTTTGGATCAAAAGATAAACACAAAATCATTCTCAAGATAATGGACAAAGACACCTTTTCTGCTGATGACTTCATGGGACAAACCATAATTTATGTGAAGGATTTGTTGACTCAAGGTGTAGAAAATGGAGTTTCTAAACTACCACCTCTCAAGTATAGAGTTGTTCGTGCAGACCAATCTTATCGTGGAGAAGTTGATGTTGCCATTACCTTTACTCAGAAGGTGGCAGATGAACTTATTGAAGAAGACATAGGAGGATGGAAAGAGAGTAACTACTATCTATCTTAA 477 0.369 MTIGFMEVHVLKAKGLNTTCFFGGMEDPYVLIQYEGQEHKSTVAKGRGRNHVWDEKFMFKVDNFGSKDKHKIILKIMDKDTFSADDFMGQTIIYVKDLLTQGVENGVSKLPPLKYRVVRADQSYRGEVDVAITFTQKVADELIEEDIGGWKESNYYLS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01822 158 Pfam C2 domain 6 106 IPR000008 -
Vifa1g01822 158 PANTHER C2 DOMAIN-CONTAINING 3 138 - -
Vifa1g01822 158 Gene3D C2 domain 3 136 IPR035892 -
Vifa1g01822 158 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Vifa1g01822 158 SMART C2_3c 5 107 IPR000008 -
Vifa1g01822 158 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 136 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01822 Vifa-Chr1 295726064 295726940 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01822 3 106 C2H2 Transcription Factor Family AT4G21160 37.143 1.27e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01822 - - gmx:100791344 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01822 1 295726064 295726940 Vifa1g01822 1 295726064 295726940 ECH