Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01821 ATGGCCGAAGAATCTAAACCAGTCTGTGAAGATGCAATTCCGCCACAAAAAATCGGAAACAAGAGGGAGTATGAAGATGATGATCAGAAGGAAGTTATTGCAAAGAAGACGAAGACATGCGAGAAACTTAAAGCTAAAATCGAATCTGATACCAGTGGCGGATCTTTGGAATCATTCGATGATGGTGTCTCAGATCCTAACTCGAACAAAAGCCCTGACGAAGACAATCCCGAAGATTTGGAGAGTCTTGAGGGCAATGAGGAAGAAGTAGAGGGAAAAGTCTCTAAAACACCTCAGGAGAGGCATGGATCTCCCATAACTCTAAACGAAAAGTATGTTGCACAAAAGACAATATGTGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCGAATTCAAAACAGATTCTGAAGGAAGGTTTAGAGGCTTTGGGTTTGTCAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAATTTGCATAATACAGAATTATTAAATCGCCGTATCAAAGTTGAGATAGCTCGGGAAAAGAGAGAATATCCCCCCTATAGAAGCTTGAGCAGTTCATTTCATACGGGTGGCAATCTTCACTCTCACACTTCAAAGGGTTTTGACGCATCTCTTCTAGAAAACAAGGCTAAAAGCCCATCTACACCAAAGGAAACAAAGGGTACATCAAAGACAGTATATGTCGGAAACTTGTCATACACCGTAGAACGAGCTGATGTGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTACGTCTCTATACAGACCGCGAAGGGAAGTTTAAAGGCCACGGACATGTACAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCTTTGAAGAATAAAGTATTTTTTAAACGTTCAATGATTGTTGATTTAGCTTTCGAAAGGCCTAAATATTCCCCCAATGGAAGCTCGGCCTGGAGCAACTCATTCCATAAGGATGAAAGATTTCAGTCTCAAACTGTACCTGTGAAGTGTTTAGATACATCTCTTGCGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTATCTCTGCTGAGAATAAGCCTGAAATCCCAGCTACCCGAATAGAGAAAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGCTGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGCCTCCATGTGGATGTCGAGTTTGCAACTGCAGAGACAGCTGAAAAGGCTCTTGAGTTGGATTACACAAGATTGACGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACACTTCTCAAATAGAAGCAGCTTGAGCATTCAATTCCAGCAGTGCGAGCCTCTAACTGTATATGTGGTTGGATTTAATACATTCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGCGAGATTGCAAGGATCTCATTACCAAAAAATCGTGATTCTGGTATTATTAAGGGGCATGCTTATTTGAATTTCAAGGATCTTGATGGCTATAAGAAAGCACTGCAACTTGATCAAACTGCGATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAATGCATAGACGTGATAATCAGGATATATGTGGTGGCAGAGGTAACTATGGACTAAATCATAGACATGATAATCATGATGTAGGTGGTAGCTATCTAGCCGGTGGAAGGGATGGACCAAGTTATTTATGTCATAATCAAGGCAGAGGTGGCTATCACGTCGGTGGATGGGATGAAGCAAATTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGTGGCAGCTATCACGTCGGTAGAAGGGGTGGAGGAGACTATGGTGGTGGCAGAGAGGTAGCTATCATGTCGGTGGAAGGGTTGGTGGAGACTATGGTAGTAGAGCAGGTTGGGGGAGAAGTCATGGTGCTGAGAGGCACTGGTGAAGGCATAGGGAGAAATACAGCTTTTGCTGAAGATGACTATTGCACAAGTTGCTGA 2103 0.4227 MAEESKPVCEDAIPPQKIGNKREYEDDDQKEVIAKKTKTCEKLKAKIESDTSGGSLESFDDGVSDPNSNKSPDEDNPEDLESLEGNEEEVEGKVSKTPQERHGSPITLNEKYVAQKTICVRNLSYSVERADMEDIFKDCGEVVDVEFKTDSEGRFRGFGFVKFGTVEAAEKALNLHNTELLNRRIKVEIAREKREYPPYRSLSSSFHTGGNLHSHTSKGFDASLLENKAKSPSTPKETKGTSKTVYVGNLSYTVERADVEKLFKDYGEIVDVRLYTDREGKFKGHGHVQFATEEAAQKALALKNKVFFKRSMIVDLAFERPKYSPNGSSAWSNSFHKDERFQSQTVPVKCLDTSLAEGKLSCAKEVKDVEMFDAISAENKPEIPATRIEKSAASKRVCVRNLSFAVERAEIENIFKDCGVVVDVRLHVDVEFATAETAEKALELDYTRLTNHPVKVGIAPGEGEHFSNRSSLSIQFQQCEPLTVYVVGFNTFLAEEKIKASLHNHFKSCGEIARISLPKNRDSGIIKGHAYLNFKDLDGYKKALQLDQTAIGDHWVSVEKAKPMHRRDNQDICGGRGNYGLNHRHDNHDVGGSYLAGGRDGPSYLCHNQGRGGYHVGGWDEANYRRDNQGMGGGSGSYHVGRRGGGDYGGGREVAIMSVEGLVETMVVEQVGGEVMVLRGTGEGIGRNTAFAEDDYCTSC 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01821 700 MobiDBLite consensus disorder prediction 45 108 - -
Vifa1g01821 700 MobiDBLite consensus disorder prediction 51 66 - -
Vifa1g01821 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 563 IPR000504 GO:0003723
Vifa1g01821 700 Gene3D - 212 326 IPR012677 -
Vifa1g01821 700 Gene3D - 19 197 IPR012677 -
Vifa1g01821 700 Gene3D - 356 472 IPR012677 -
Vifa1g01821 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 319 IPR000504 GO:0003723
Vifa1g01821 700 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g01821 700 SUPERFAMILY RNA-binding domain, RBD 233 330 IPR035979 GO:0003676
Vifa1g01821 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 192 IPR000504 GO:0003723
Vifa1g01821 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 395 461 IPR000504 GO:0003723
Vifa1g01821 700 Gene3D - 477 590 IPR012677 -
Vifa1g01821 700 SUPERFAMILY RNA-binding domain, RBD 393 469 IPR035979 GO:0003676
Vifa1g01821 700 SMART rrm1_1 396 457 IPR000504 GO:0003723
Vifa1g01821 700 SMART rrm1_1 244 315 IPR000504 GO:0003723
Vifa1g01821 700 SMART rrm1_1 117 188 IPR000504 GO:0003723
Vifa1g01821 700 SMART rrm1_1 483 559 IPR000504 GO:0003723
Vifa1g01821 700 SUPERFAMILY RNA-binding domain, RBD 501 591 IPR035979 GO:0003676
Vifa1g01821 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 554 IPR000504 GO:0003723
Vifa1g01821 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 397 454 IPR000504 GO:0003723
Vifa1g01821 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 310 IPR000504 GO:0003723
Vifa1g01821 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Vifa1g01821 700 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 232 325 - -
Vifa1g01821 700 SUPERFAMILY RNA-binding domain, RBD 106 216 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01821 Vifa-Chr1 295655901 295665658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01821 117 484 Eukaryotic Initiation Factors Gene Family AT4G34110 22.248 2.01e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01821 - - psat:127118287 940.258