Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01820 ATGGCCGAAGAATCTAAACCAGTCTGTGAAGATGCAATTCCGCCACAAAAAATCGGAAACAAGAGGGAGTATGAAGATGATGATCAGAAGGAAGTTATTGCAAAGAAGACGAAGACATGCGAGAAACTTAAAGCTAAAATCGAATCTGATACCAGTGGCGGATCTTTGGAATCATTCGATGATGGTGTCTCAGATCCTAACTCGAACAAAAGCCCTGACGAAGACAATCCCGAAGATTTGGAGAGTCTTGAGGGCAATGAGGAAGAAGTAGAGGGAAAAGTCTCTAAAACACCTCAGGAGAGGCATGGATCTCCCATAACTCTAAACGAAAAGTATGTTGCACAAAAGACAATATGTGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCGAATTCAAAACAGATTCTGAAGGAAGGTTTAGAGGCTTTGGGTTTGTCAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAATTTGCATAATACAGAATTATTAAATCGCCGTATCAAAGTTGAGATAGCTCGGGAAAAGAGAGAATATCCCCCCTATAGAAGCTTGAGCAGTTCATTTCATACGGGTGGCAATCTTCACTCTCACACTTCAAAGGGTTTTGACGCATCTCTTCTAGAAAACAAGGCTAAAAGCCCATCTACACCAAAGGAAACAAAGGGTACATCAAAGACAGTATATGTCGGAAACTTGTCATACACCGTAGAACGAGCTGATGTGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTACGTCTCTATACAGACCGCGAAGGGAAGTTTAAAGGCCACGGACATGTACAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCTTTGAAGAATAAAGTATTTTTTAAACGTTCAATGATTGTTGATTTAGCTTTCGAAAGGCCTAAATATTCCCCCAATGGAAGCTCGGCCTGGAGCAACTCATTCCATAAGGATGAAAGATTTCAGTCTCAAACTGTACCTGTGAAGTGTTTAGATACATCTCTTGCGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTATCTCTGCTGAGAATAAGCCTGAAATCCCAGCTACCCGAATAGAGAAAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGCTGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGCCTCCATGTGGATGTCGAGTTTGCAACTGCAGAGACAGCTGAAAAGGCTCTTGAGTTGGATTACACAAGATTGACGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACACTTCTCAAATAGAAGCTTGAGCATTCAATTCCAGCAGTGCGAGCCTCTAACTGTATATGTGGTTGGATTTAATACATTCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGCGAGATTGCAAGGATCTCATTACCAAAAAATCGTGATTCTGGTATTATTAAGGGGCATGCTTATTTGAATTTCAAGGATCTTGATGGCTATAAGAAAGCACTGCAACTTGATCAAACTGCGATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAATGCATAGACGTGATAATCAGGATATATGTGGTGGCAGAGGTAACTATGGACTAAATCATAGACATGATAATCATGATGTAGGTGGTAGCTATCTAGCCGGTGGAAGGGATGGACCAAGTTATTTATGTCATAATCAAGGCAGAGGTGGCTATCACGTCGGTGGATGGGATGAAGCAAATTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGTGGCAGCTATCACGTCGGTAGAAGGGGTGGAGGAGACTATGGTGGTGGCAGAGAGGTAGCTATCATGTCGGTGGAAGGGTTGGTGGAGACTATGGTAGTAGAGCAGGTTGGGGGAGAAGTCATGGTGCTGAGAGGCACTGGTGAAGGCATAGGGAGAAATACAGCTTTTGCTGAAGATGACTATTGCACAAGTTGCTGA 2100 0.4224 MAEESKPVCEDAIPPQKIGNKREYEDDDQKEVIAKKTKTCEKLKAKIESDTSGGSLESFDDGVSDPNSNKSPDEDNPEDLESLEGNEEEVEGKVSKTPQERHGSPITLNEKYVAQKTICVRNLSYSVERADMEDIFKDCGEVVDVEFKTDSEGRFRGFGFVKFGTVEAAEKALNLHNTELLNRRIKVEIAREKREYPPYRSLSSSFHTGGNLHSHTSKGFDASLLENKAKSPSTPKETKGTSKTVYVGNLSYTVERADVEKLFKDYGEIVDVRLYTDREGKFKGHGHVQFATEEAAQKALALKNKVFFKRSMIVDLAFERPKYSPNGSSAWSNSFHKDERFQSQTVPVKCLDTSLAEGKLSCAKEVKDVEMFDAISAENKPEIPATRIEKSAASKRVCVRNLSFAVERAEIENIFKDCGVVVDVRLHVDVEFATAETAEKALELDYTRLTNHPVKVGIAPGEGEHFSNRSLSIQFQQCEPLTVYVVGFNTFLAEEKIKASLHNHFKSCGEIARISLPKNRDSGIIKGHAYLNFKDLDGYKKALQLDQTAIGDHWVSVEKAKPMHRRDNQDICGGRGNYGLNHRHDNHDVGGSYLAGGRDGPSYLCHNQGRGGYHVGGWDEANYRRDNQGMGGGSGSYHVGRRGGGDYGGGREVAIMSVEGLVETMVVEQVGGEVMVLRGTGEGIGRNTAFAEDDYCTSC 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01820 699 SUPERFAMILY RNA-binding domain, RBD 500 590 IPR035979 GO:0003676
Vifa1g01820 699 MobiDBLite consensus disorder prediction 51 66 - -
Vifa1g01820 699 MobiDBLite consensus disorder prediction 45 108 - -
Vifa1g01820 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 319 IPR000504 GO:0003723
Vifa1g01820 699 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g01820 699 SUPERFAMILY RNA-binding domain, RBD 233 330 IPR035979 GO:0003676
Vifa1g01820 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 192 IPR000504 GO:0003723
Vifa1g01820 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 395 461 IPR000504 GO:0003723
Vifa1g01820 699 SMART rrm1_1 396 457 IPR000504 GO:0003723
Vifa1g01820 699 SMART rrm1_1 482 558 IPR000504 GO:0003723
Vifa1g01820 699 SMART rrm1_1 117 188 IPR000504 GO:0003723
Vifa1g01820 699 SMART rrm1_1 244 315 IPR000504 GO:0003723
Vifa1g01820 699 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 230 325 - -
Vifa1g01820 699 Gene3D - 474 589 IPR012677 -
Vifa1g01820 699 SUPERFAMILY RNA-binding domain, RBD 393 471 IPR035979 GO:0003676
Vifa1g01820 699 Gene3D - 212 326 IPR012677 -
Vifa1g01820 699 Gene3D - 19 197 IPR012677 -
Vifa1g01820 699 Gene3D - 356 471 IPR012677 -
Vifa1g01820 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 481 562 IPR000504 GO:0003723
Vifa1g01820 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 553 IPR000504 GO:0003723
Vifa1g01820 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 397 454 IPR000504 GO:0003723
Vifa1g01820 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 310 IPR000504 GO:0003723
Vifa1g01820 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Vifa1g01820 699 SUPERFAMILY RNA-binding domain, RBD 106 216 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01820 Vifa-Chr1 295655901 295665658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01820 117 483 Eukaryotic Initiation Factors Gene Family AT4G34110 22.066 8.59e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01820 - - psat:127118287 944.88