Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g01820 | ATGGCCGAAGAATCTAAACCAGTCTGTGAAGATGCAATTCCGCCACAAAAAATCGGAAACAAGAGGGAGTATGAAGATGATGATCAGAAGGAAGTTATTGCAAAGAAGACGAAGACATGCGAGAAACTTAAAGCTAAAATCGAATCTGATACCAGTGGCGGATCTTTGGAATCATTCGATGATGGTGTCTCAGATCCTAACTCGAACAAAAGCCCTGACGAAGACAATCCCGAAGATTTGGAGAGTCTTGAGGGCAATGAGGAAGAAGTAGAGGGAAAAGTCTCTAAAACACCTCAGGAGAGGCATGGATCTCCCATAACTCTAAACGAAAAGTATGTTGCACAAAAGACAATATGTGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCGAATTCAAAACAGATTCTGAAGGAAGGTTTAGAGGCTTTGGGTTTGTCAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAATTTGCATAATACAGAATTATTAAATCGCCGTATCAAAGTTGAGATAGCTCGGGAAAAGAGAGAATATCCCCCCTATAGAAGCTTGAGCAGTTCATTTCATACGGGTGGCAATCTTCACTCTCACACTTCAAAGGGTTTTGACGCATCTCTTCTAGAAAACAAGGCTAAAAGCCCATCTACACCAAAGGAAACAAAGGGTACATCAAAGACAGTATATGTCGGAAACTTGTCATACACCGTAGAACGAGCTGATGTGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTACGTCTCTATACAGACCGCGAAGGGAAGTTTAAAGGCCACGGACATGTACAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCTTTGAAGAATAAAGTATTTTTTAAACGTTCAATGATTGTTGATTTAGCTTTCGAAAGGCCTAAATATTCCCCCAATGGAAGCTCGGCCTGGAGCAACTCATTCCATAAGGATGAAAGATTTCAGTCTCAAACTGTACCTGTGAAGTGTTTAGATACATCTCTTGCGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTATCTCTGCTGAGAATAAGCCTGAAATCCCAGCTACCCGAATAGAGAAAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGCTGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGCCTCCATGTGGATGTCGAGTTTGCAACTGCAGAGACAGCTGAAAAGGCTCTTGAGTTGGATTACACAAGATTGACGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACACTTCTCAAATAGAAGCTTGAGCATTCAATTCCAGCAGTGCGAGCCTCTAACTGTATATGTGGTTGGATTTAATACATTCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGCGAGATTGCAAGGATCTCATTACCAAAAAATCGTGATTCTGGTATTATTAAGGGGCATGCTTATTTGAATTTCAAGGATCTTGATGGCTATAAGAAAGCACTGCAACTTGATCAAACTGCGATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAATGCATAGACGTGATAATCAGGATATATGTGGTGGCAGAGGTAACTATGGACTAAATCATAGACATGATAATCATGATGTAGGTGGTAGCTATCTAGCCGGTGGAAGGGATGGACCAAGTTATTTATGTCATAATCAAGGCAGAGGTGGCTATCACGTCGGTGGATGGGATGAAGCAAATTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGTGGCAGCTATCACGTCGGTAGAAGGGGTGGAGGAGACTATGGTGGTGGCAGAGAGGTAGCTATCATGTCGGTGGAAGGGTTGGTGGAGACTATGGTAGTAGAGCAGGTTGGGGGAGAAGTCATGGTGCTGAGAGGCACTGGTGAAGGCATAGGGAGAAATACAGCTTTTGCTGAAGATGACTATTGCACAAGTTGCTGA | 2100 | 0.4224 | MAEESKPVCEDAIPPQKIGNKREYEDDDQKEVIAKKTKTCEKLKAKIESDTSGGSLESFDDGVSDPNSNKSPDEDNPEDLESLEGNEEEVEGKVSKTPQERHGSPITLNEKYVAQKTICVRNLSYSVERADMEDIFKDCGEVVDVEFKTDSEGRFRGFGFVKFGTVEAAEKALNLHNTELLNRRIKVEIAREKREYPPYRSLSSSFHTGGNLHSHTSKGFDASLLENKAKSPSTPKETKGTSKTVYVGNLSYTVERADVEKLFKDYGEIVDVRLYTDREGKFKGHGHVQFATEEAAQKALALKNKVFFKRSMIVDLAFERPKYSPNGSSAWSNSFHKDERFQSQTVPVKCLDTSLAEGKLSCAKEVKDVEMFDAISAENKPEIPATRIEKSAASKRVCVRNLSFAVERAEIENIFKDCGVVVDVRLHVDVEFATAETAEKALELDYTRLTNHPVKVGIAPGEGEHFSNRSLSIQFQQCEPLTVYVVGFNTFLAEEKIKASLHNHFKSCGEIARISLPKNRDSGIIKGHAYLNFKDLDGYKKALQLDQTAIGDHWVSVEKAKPMHRRDNQDICGGRGNYGLNHRHDNHDVGGSYLAGGRDGPSYLCHNQGRGGYHVGGWDEANYRRDNQGMGGGSGSYHVGRRGGGDYGGGREVAIMSVEGLVETMVVEQVGGEVMVLRGTGEGIGRNTAFAEDDYCTSC | 699 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g01820 | 699 | SUPERFAMILY | RNA-binding domain, RBD | 500 | 590 | IPR035979 | GO:0003676 | |
Vifa1g01820 | 699 | MobiDBLite | consensus disorder prediction | 51 | 66 | - | - | |
Vifa1g01820 | 699 | MobiDBLite | consensus disorder prediction | 45 | 108 | - | - | |
Vifa1g01820 | 699 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 243 | 319 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Vifa1g01820 | 699 | SUPERFAMILY | RNA-binding domain, RBD | 233 | 330 | IPR035979 | GO:0003676 | |
Vifa1g01820 | 699 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 192 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 395 | 461 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | SMART | rrm1_1 | 396 | 457 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | SMART | rrm1_1 | 482 | 558 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | SMART | rrm1_1 | 117 | 188 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | SMART | rrm1_1 | 244 | 315 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 230 | 325 | - | - | |
Vifa1g01820 | 699 | Gene3D | - | 474 | 589 | IPR012677 | - | |
Vifa1g01820 | 699 | SUPERFAMILY | RNA-binding domain, RBD | 393 | 471 | IPR035979 | GO:0003676 | |
Vifa1g01820 | 699 | Gene3D | - | 212 | 326 | IPR012677 | - | |
Vifa1g01820 | 699 | Gene3D | - | 19 | 197 | IPR012677 | - | |
Vifa1g01820 | 699 | Gene3D | - | 356 | 471 | IPR012677 | - | |
Vifa1g01820 | 699 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 481 | 562 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 498 | 553 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 397 | 454 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 245 | 310 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 186 | IPR000504 | GO:0003723 | |
Vifa1g01820 | 699 | SUPERFAMILY | RNA-binding domain, RBD | 106 | 216 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g01820 | Vifa-Chr1 | 295655901 | 295665658 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g01820 | 117 | 483 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 22.066 | 8.59e-10 | 60.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g01820 | - | - | psat:127118287 | 944.88 |