Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01819 ATGGCCGAAGAATCTAAACCAGTCTGTGAAGATGCAATTCCGCCACAAAAAATCGGAAACAAGAGGGAGTATGAAGATGATGATCAGAAGGAAGTTATTGCAAAGAAGACGAAGACATGCGAGAAACTTAAAGCTAAAATCGAATCTGATACCAGTGGCGGATCTTTGGAATCATTCGATGATGGTGTCTCAGATCCTAACTCGAACAAAAGCCCTGACGAAGACAATCCCGAAGATTTGGAGAGTCTTGAGGGCAATGAGGAAGAAGTAGAGGGAAAAGTCTCTAAAACACCTCAGGAGAGGCATGGATCTCCCATAACTCTAAACGAAAAGTATGTTGCACAAAAGACAATATGTGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCGAATTCAAAACAGATTCTGAAGGAAGGTTTAGAGGCTTTGGGTTTGTCAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAATTTGCATAATACAGAATTATTAAATCGCCGTATCAAAGTTGAGATAGCTCGGGAAAAGAGAGAATATCCCCCCTATAGAAGTTCATTTCATACGGGTGGCAATCTTCACTCTCACACTTCAAAGGGTTTTGACGCATCTCTTCTAGAAAACAAGGCTAAAAGCCCATCTACACCAAAGGAAACAAAGGGTACATCAAAGACAGTATATGTCGGAAACTTGTCATACACCGTAGAACGAGCTGATGTGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTACGTCTCTATACAGACCGCGAAGGGAAGTTTAAAGGCCACGGACATGTACAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCTTTGAAGAATAAAGTATTTTTTAAACGTTCAATGATTGTTGATTTAGCTTTCGAAAGGCCTAAATATTCCCCCAATGGAAGCTCGGCCTGGAGCAACTCATTCCATAAGGATGAAAGATTTCAGTCTCAAACTGTACCTGTGAAGTGTTTAGATACATCTCTTGCGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTATCTCTGCTGAGAATAAGCCTGAAATCCCAGCTACCCGAATAGAGAAAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGCTGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGCCTCCATGTGGATGTCGAGTTTGCAACTGCAGAGACAGCTGAAAAGGCTCTTGAGTTGGATTACACAAGATTGACGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACACTTCTCAAATAGAAGCTTGAGCATTCAATTCCAGCAGTGCGAGCCTCTAACTGTATATGTGGTTGGATTTAATACATTCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGCGAGATTGCAAGGATCTCATTACCAAAAAATCGTGATTCTGGTATTATTAAGGGGCATGCTTATTTGAATTTCAAGGATCTTGATGGCTATAAGAAAGCACTGCAACTTGATCAAACTGCGATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAATGCATAGACGTGATAATCAGGATATATGTGGTGGCAGAGGTAACTATGGACTAAATCATAGACATGATAATCATGATGTAGGTGGTAGCTATCTAGCCGGTGGAAGGGATGGACCAAGTTATTTATGTCATAATCAAGGCAGAGGTGGCTATCACGTCGGTGGATGGGATGAAGCAAATTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGTGGCAGCTATCACGTCGGTAGAAGGGGTGGAGGAGACTATGGTGGTGGCAGAGAGGTAGCTATCATGTCGGTGGAAGGGTTGGTGGAGACTATGGTAGTAGAGCAGGTTGGGGGAGAAGTCATGGTGCTGAGAGGCACTGGTGAAGGCATAGGGAGAAATACAGCTTTTGCTGAAGATGACTATTGCACAAGTTGCTGA 2091 0.4218 MAEESKPVCEDAIPPQKIGNKREYEDDDQKEVIAKKTKTCEKLKAKIESDTSGGSLESFDDGVSDPNSNKSPDEDNPEDLESLEGNEEEVEGKVSKTPQERHGSPITLNEKYVAQKTICVRNLSYSVERADMEDIFKDCGEVVDVEFKTDSEGRFRGFGFVKFGTVEAAEKALNLHNTELLNRRIKVEIAREKREYPPYRSSFHTGGNLHSHTSKGFDASLLENKAKSPSTPKETKGTSKTVYVGNLSYTVERADVEKLFKDYGEIVDVRLYTDREGKFKGHGHVQFATEEAAQKALALKNKVFFKRSMIVDLAFERPKYSPNGSSAWSNSFHKDERFQSQTVPVKCLDTSLAEGKLSCAKEVKDVEMFDAISAENKPEIPATRIEKSAASKRVCVRNLSFAVERAEIENIFKDCGVVVDVRLHVDVEFATAETAEKALELDYTRLTNHPVKVGIAPGEGEHFSNRSLSIQFQQCEPLTVYVVGFNTFLAEEKIKASLHNHFKSCGEIARISLPKNRDSGIIKGHAYLNFKDLDGYKKALQLDQTAIGDHWVSVEKAKPMHRRDNQDICGGRGNYGLNHRHDNHDVGGSYLAGGRDGPSYLCHNQGRGGYHVGGWDEANYRRDNQGMGGGSGSYHVGRRGGGDYGGGREVAIMSVEGLVETMVVEQVGGEVMVLRGTGEGIGRNTAFAEDDYCTSC 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01819 696 MobiDBLite consensus disorder prediction 51 66 - -
Vifa1g01819 696 MobiDBLite consensus disorder prediction 45 108 - -
Vifa1g01819 696 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 227 323 - -
Vifa1g01819 696 Gene3D - 471 586 IPR012677 -
Vifa1g01819 696 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g01819 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 559 IPR000504 GO:0003723
Vifa1g01819 696 Gene3D - 19 198 IPR012677 -
Vifa1g01819 696 Gene3D - 210 323 IPR012677 -
Vifa1g01819 696 Gene3D - 353 468 IPR012677 -
Vifa1g01819 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 192 IPR000504 GO:0003723
Vifa1g01819 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 458 IPR000504 GO:0003723
Vifa1g01819 696 SUPERFAMILY RNA-binding domain, RBD 230 327 IPR035979 GO:0003676
Vifa1g01819 696 SUPERFAMILY RNA-binding domain, RBD 106 209 IPR035979 GO:0003676
Vifa1g01819 696 SUPERFAMILY RNA-binding domain, RBD 390 468 IPR035979 GO:0003676
Vifa1g01819 696 SUPERFAMILY RNA-binding domain, RBD 497 587 IPR035979 GO:0003676
Vifa1g01819 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 316 IPR000504 GO:0003723
Vifa1g01819 696 SMART rrm1_1 479 555 IPR000504 GO:0003723
Vifa1g01819 696 SMART rrm1_1 117 188 IPR000504 GO:0003723
Vifa1g01819 696 SMART rrm1_1 241 312 IPR000504 GO:0003723
Vifa1g01819 696 SMART rrm1_1 393 454 IPR000504 GO:0003723
Vifa1g01819 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 550 IPR000504 GO:0003723
Vifa1g01819 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 451 IPR000504 GO:0003723
Vifa1g01819 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 307 IPR000504 GO:0003723
Vifa1g01819 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01819 Vifa-Chr1 295655901 295665658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01819 117 480 Eukaryotic Initiation Factors Gene Family AT4G34110 22.222 3.86e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01819 - - psat:127118287 950.273