Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01818 ATGACAATTGGATTCATGGAAGTTCTTGTTCTCAAAGCAAAGGGTCTCCAAGAGTCCGATATCTTCGCTCGCATGGATCCGTATGTCGTGTTACAATACAAAAATCAAGAGAAAAAGAGCAGCGTAGTTCATGAGGGTGGTAGCAATCTTGAATGGAATGAGAAATTTGTATTCAGAGTCGAATACCCTGGATCAGGTGACCAATATAAGATCAACCTTAAAATCATGGACAAAGATGTTTTCACTGCAGATGATTTTGTCGGCCAGGCCATAATCTACGTAAAAGATTTATTAGCGGAAGGCGTAGAGAAAGGCTCATCTGTGCTTCGTCCTCGCAAGTATAGTGTGGTTCGAGCGGACAATTCTTATTGCGGTGAGATCGAAGTTGGTATAAATTTCACTAGAAAGGAAGAGGAACATAGTGACGGCGAGTATGGAGGATGGAAGGATAGTGAGTATTAG 462 0.4177 MTIGFMEVLVLKAKGLQESDIFARMDPYVVLQYKNQEKKSSVVHEGGSNLEWNEKFVFRVEYPGSGDQYKINLKIMDKDVFTADDFVGQAIIYVKDLLAEGVEKGSSVLRPRKYSVVRADNSYCGEIEVGINFTRKEEEHSDGEYGGWKDSEY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01818 153 Pfam C2 domain 6 103 IPR000008 -
Vifa1g01818 153 PANTHER C2 DOMAIN-CONTAINING 3 139 - -
Vifa1g01818 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Vifa1g01818 153 SMART C2_3c 5 106 IPR000008 -
Vifa1g01818 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 136 IPR035892 -
Vifa1g01818 153 Gene3D C2 domain 3 135 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01818 Vifa-Chr1 295650871 295651955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01818 3 105 C2H2 Transcription Factor Family AT4G21160 32.381 3.60e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01818 - - gmx:100500493 251.906