Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01817 ATGCGGAGGAACAGTCCGGGTTACTACAGTCCTCCACGGAGAGGATACGGCGGAAGGGGACCTAGTAGAAGGGGTTACGGTGGTGGTGGTGGCGGCGGCGGAGGAGGTGGTGGTAGGCGCAGAGAGGGTAGCAATGGAAGCCTTTTGGTGAGGAACATTCCGTTAGATTGTAGAGCCGAGGAACTTCGAGCTCCTTTTGAACGATTTGGACCGGTTCGTGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGTGGCTTTGCGTTCGTTCAGTTTGTGGATTCCTATGATGCCTCCGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTAGTTGTAGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGAGGCATAGGACTGGCAGGCCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCTAGATCACCTCCTTATCATTCTGGGTCTAGAAGTCGCTATCGATCAAGGTCCAGGTCTTTCTCTCCTCCCCCAAGGCGGCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGTAGAACGCCCTAGATCACCTAGAAGCCCTCCCAGAAGTCCTCCTGTGGAGCGAGCTGGGGACCATAAACGTAGGTCGTATTCTCCAGCTTTTGACAATGGTGCTGATCAGGATCCAAGCAATGGATATGCAGAGAAATCTATGTACAAATCTGAGGGTGATCGAGGTCAGTGGAAGTCATCCGGACAAAGAACATCAAGATCACCCCCTGGATCTAGATCAAGATCTGCTGAATTGTCACCTAGACGTGGAAGATAA 861 0.5122 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGGGGGGGGGGRRREGSNGSLLVRNIPLDCRAEELRAPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTGRPRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRSRYRSRSRSFSPPPRRQGDYSVSPRRHVERPRSPRSPPRSPPVERAGDHKRRSYSPAFDNGADQDPSNGYAEKSMYKSEGDRGQWKSSGQRTSRSPPGSRSRSAELSPRRGR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01817 286 MobiDBLite consensus disorder prediction 194 208 - -
Vifa1g01817 286 SMART rrm1_1 47 120 IPR000504 GO:0003723
Vifa1g01817 286 Gene3D - 39 163 IPR012677 -
Vifa1g01817 286 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 39 181 - -
Vifa1g01817 286 MobiDBLite consensus disorder prediction 149 190 - -
Vifa1g01817 286 MobiDBLite consensus disorder prediction 124 138 - -
Vifa1g01817 286 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 40 251 - -
Vifa1g01817 286 SUPERFAMILY RNA-binding domain, RBD 44 152 IPR035979 GO:0003676
Vifa1g01817 286 MobiDBLite consensus disorder prediction 216 230 - -
Vifa1g01817 286 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g01817 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Vifa1g01817 286 MobiDBLite consensus disorder prediction 255 276 - -
Vifa1g01817 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Vifa1g01817 286 MobiDBLite consensus disorder prediction 124 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01817 Vifa-Chr1 295591710 295594576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01817 28 108 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 2.60e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01817 K12900 - gmx:100804294 298.13