Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01816 ATGCGGAGGAACAGTCCGGGTTACTACAGTCCTCCACGGAGAGGATACGGCGGAAGGGGACCTAGTAGAAGGGGTTACGGTGGTGGTGGTGGCGGCGGCGGAGGAGGTGGTGGTAGGCGCAGAGAGGGTAGCAATGGAAGCCTTTTGGTGAGGAACATTCCGTTAGATTGTAGAGCCGAGGAACTTCGAGCTCCTTTTGAACGATTTGGACCGGTTCGTGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGTGGCTTTGCGTTCGTTCAGTTTGTGGATTCCTATGATGCCTCCGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTAGTTGTAGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGAGGCATAGGACTGGCAGGCCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCTAGATCACCTCCTTATCATTCTGGGTCTAGAAGTCGCTATCGATCAAGGTCTTTCTCTCCTCCCCCAAGGCGGCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGTAGAACGCCCTAGATCACCTAGAAGCCCTCCCAGAAGTCCTCCTGTGGAGCGAGCTGGGGACCATAAACGTAGGTCGTATTCTCCAGCTTTTGACAATGGTGCTGATCAGGATCCAAGCAATGGATATGCAGAGAAATCTATGTACAAATCTGAGGGTGATCGAGGTCAGTGGAAGTCATCCGGACAAAGAACATCAAGATCACCCCCTGGATCTAGATCAAGATCTGCTGAATTGTCACCTAGACGTGGAAGATAA 855 0.5111 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGGGGGGGGGGRRREGSNGSLLVRNIPLDCRAEELRAPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTGRPRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRSRYRSRSFSPPPRRQGDYSVSPRRHVERPRSPRSPPRSPPVERAGDHKRRSYSPAFDNGADQDPSNGYAEKSMYKSEGDRGQWKSSGQRTSRSPPGSRSRSAELSPRRGR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01816 284 SMART rrm1_1 47 120 IPR000504 GO:0003723
Vifa1g01816 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Vifa1g01816 284 MobiDBLite consensus disorder prediction 214 228 - -
Vifa1g01816 284 MobiDBLite consensus disorder prediction 124 284 - -
Vifa1g01816 284 MobiDBLite consensus disorder prediction 253 274 - -
Vifa1g01816 284 MobiDBLite consensus disorder prediction 124 138 - -
Vifa1g01816 284 MobiDBLite consensus disorder prediction 192 206 - -
Vifa1g01816 284 Gene3D - 39 160 IPR012677 -
Vifa1g01816 284 SUPERFAMILY RNA-binding domain, RBD 44 152 IPR035979 GO:0003676
Vifa1g01816 284 MobiDBLite consensus disorder prediction 149 188 - -
Vifa1g01816 284 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g01816 284 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 40 250 - -
Vifa1g01816 284 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 39 181 - -
Vifa1g01816 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01816 Vifa-Chr1 295591710 295594576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01816 28 108 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 2.22e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01816 K12900 - gmx:100804294 303.138