Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g01812 | ATGGGTTGTTGCTTTAGTGCCAGAATCAAAGCTGAAAGCCCTCTACGCAATGGTTCGAGTTTGAAGGATAGTGGCAAAGAAAATGGCTTGAGTGGGCGGAGCAGCGGCAAGACCTCTGCTCCGCCTACTGCGCCTCCAACTCCGCGGACGCAGGGCGAGATCTTGAAGTCTTCTAATATGAAGAGCTTCACTTTAAGTGAGCTGAAAACTGCTACGAGAAACTTTCGTCCTGATAGTGTGGTTGGTGAAGGTGGATTTGGAGCTGTATTTAAGGGGTGGATTGATGAGCACTCGCTTACACCGGTTAGACCGGGGACTGGAGTTGTCATTGCTGTCAAGAGGCTTAACCAAGAAGGTTTGCAAGGACATAGTGAATGGTTGACAGAAATCAATTACCTGGGCCAGCTGCATCATCCTAATCTTGTGAAACTTATTGGTTACTGCCTCGAAGACGAACATCGGCTTTTGGTTTACGAGTTTTTGACTAAGGGCAGTTTGGATAATCATTTATTTAGAAGAGCTTCTTACTTTCAACCACTTTCGTGGACAATACGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCACAGCGACGAAGCAAAAGTGATATATCGAGACTTTAAAACTGCAAATATATTGCTCGACTCGTCTTATAATGCAAAACTTTCCGACTTCGGCTTGGCAAAGGACGGTCCAGCAGGTGATAAGAGTCATGTCTCTACAAGGGTGATGGGCACATATGGCTATGCCGCTCCCGAATATATGGCCACAGGACATTTGACGAAAAAGAGTGATGTGTACAGCTTCGGCGTTGTACTTCTCGAAATCATGTCAGGCAAACGCGCACTTGACAACAACAGGCCATCTGGGGAACACAATTTAATCGAATGGGCCAAACCTTACCTCAACAGCAAACGGCGGATCTTCCAAGTTATGGACGCTCGCATCGAAGGCCAATACACTGTGCGTCAAGCAATTAAAGTAGCTAACCTCGCGATTCAATGCTTGTCTATTGAACCAAGATTCAGACCAAAAATGGAGGAGGTTGTAATAGCATTGGAGGAACTTCAGGGTTCCTCTGATGTTACGGCCGGAGAAGTGGGAAGCTCTCGAGATAATCAAAATGTTAAAAGGAGTGGTCATAGTCATAGCTCAAGGAGCAATGGTCCTAGACAGCATAGAAGTAATAAACAAAGTGAGACAGTAATCAATGAAAAATGA | 1233 | 0.4526 | MGCCFSARIKAESPLRNGSSLKDSGKENGLSGRSSGKTSAPPTAPPTPRTQGEILKSSNMKSFTLSELKTATRNFRPDSVVGEGGFGAVFKGWIDEHSLTPVRPGTGVVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDEHRLLVYEFLTKGSLDNHLFRRASYFQPLSWTIRMKVALDAAKGLAYLHSDEAKVIYRDFKTANILLDSSYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYTVRQAIKVANLAIQCLSIEPRFRPKMEEVVIALEELQGSSDVTAGEVGSSRDNQNVKRSGHSHSSRSNGPRQHRSNKQSETVINEK | 410 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g01812 | 410 | FunFam | Serine/threonine-protein kinase BIK1 | 43 | 160 | - | - | |
Vifa1g01812 | 410 | MobiDBLite | consensus disorder prediction | 366 | 410 | - | - | |
Vifa1g01812 | 410 | FunFam | Probable serine/threonine-protein kinase PBL8 | 161 | 377 | - | - | |
Vifa1g01812 | 410 | MobiDBLite | consensus disorder prediction | 365 | 410 | - | - | |
Vifa1g01812 | 410 | MobiDBLite | consensus disorder prediction | 14 | 56 | - | - | |
Vifa1g01812 | 410 | PANTHER | OS01G0588500 PROTEIN-RELATED | 46 | 361 | - | - | |
Vifa1g01812 | 410 | ProSitePatterns | Protein kinases ATP-binding region signature. | 81 | 113 | IPR017441 | GO:0005524 | |
Vifa1g01812 | 410 | Gene3D | Phosphorylase Kinase; domain 1 | 50 | 160 | - | - | |
Vifa1g01812 | 410 | MobiDBLite | consensus disorder prediction | 17 | 40 | - | - | |
Vifa1g01812 | 410 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 206 | 218 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g01812 | 410 | Gene3D | Transferase(Phosphotransferase) domain 1 | 161 | 382 | - | - | |
Vifa1g01812 | 410 | ProSiteProfiles | Protein kinase domain profile. | 75 | 360 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g01812 | 410 | Pfam | Protein tyrosine and serine/threonine kinase | 79 | 355 | IPR001245 | GO:0004672|GO:0006468 | |
Vifa1g01812 | 410 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 354 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g01812 | Vifa-Chr1 | 295133169 | 295135401 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g01812 | 1 | 365 | Glycoside Hydrolase | AT3G07070 | 45.745 | 1.76e-108 | 323 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Vifa1g01812 | PK_Tyr_Ser-Thr | 4.5e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g01812 | - | - | gmx:100775335 | 664.84 |