Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01812 ATGGGTTGTTGCTTTAGTGCCAGAATCAAAGCTGAAAGCCCTCTACGCAATGGTTCGAGTTTGAAGGATAGTGGCAAAGAAAATGGCTTGAGTGGGCGGAGCAGCGGCAAGACCTCTGCTCCGCCTACTGCGCCTCCAACTCCGCGGACGCAGGGCGAGATCTTGAAGTCTTCTAATATGAAGAGCTTCACTTTAAGTGAGCTGAAAACTGCTACGAGAAACTTTCGTCCTGATAGTGTGGTTGGTGAAGGTGGATTTGGAGCTGTATTTAAGGGGTGGATTGATGAGCACTCGCTTACACCGGTTAGACCGGGGACTGGAGTTGTCATTGCTGTCAAGAGGCTTAACCAAGAAGGTTTGCAAGGACATAGTGAATGGTTGACAGAAATCAATTACCTGGGCCAGCTGCATCATCCTAATCTTGTGAAACTTATTGGTTACTGCCTCGAAGACGAACATCGGCTTTTGGTTTACGAGTTTTTGACTAAGGGCAGTTTGGATAATCATTTATTTAGAAGAGCTTCTTACTTTCAACCACTTTCGTGGACAATACGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCACAGCGACGAAGCAAAAGTGATATATCGAGACTTTAAAACTGCAAATATATTGCTCGACTCGTCTTATAATGCAAAACTTTCCGACTTCGGCTTGGCAAAGGACGGTCCAGCAGGTGATAAGAGTCATGTCTCTACAAGGGTGATGGGCACATATGGCTATGCCGCTCCCGAATATATGGCCACAGGACATTTGACGAAAAAGAGTGATGTGTACAGCTTCGGCGTTGTACTTCTCGAAATCATGTCAGGCAAACGCGCACTTGACAACAACAGGCCATCTGGGGAACACAATTTAATCGAATGGGCCAAACCTTACCTCAACAGCAAACGGCGGATCTTCCAAGTTATGGACGCTCGCATCGAAGGCCAATACACTGTGCGTCAAGCAATTAAAGTAGCTAACCTCGCGATTCAATGCTTGTCTATTGAACCAAGATTCAGACCAAAAATGGAGGAGGTTGTAATAGCATTGGAGGAACTTCAGGGTTCCTCTGATGTTACGGCCGGAGAAGTGGGAAGCTCTCGAGATAATCAAAATGTTAAAAGGAGTGGTCATAGTCATAGCTCAAGGAGCAATGGTCCTAGACAGCATAGAAGTAATAAACAAAGTGAGACAGTAATCAATGAAAAATGA 1233 0.4526 MGCCFSARIKAESPLRNGSSLKDSGKENGLSGRSSGKTSAPPTAPPTPRTQGEILKSSNMKSFTLSELKTATRNFRPDSVVGEGGFGAVFKGWIDEHSLTPVRPGTGVVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDEHRLLVYEFLTKGSLDNHLFRRASYFQPLSWTIRMKVALDAAKGLAYLHSDEAKVIYRDFKTANILLDSSYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYTVRQAIKVANLAIQCLSIEPRFRPKMEEVVIALEELQGSSDVTAGEVGSSRDNQNVKRSGHSHSSRSNGPRQHRSNKQSETVINEK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01812 410 FunFam Serine/threonine-protein kinase BIK1 43 160 - -
Vifa1g01812 410 MobiDBLite consensus disorder prediction 366 410 - -
Vifa1g01812 410 FunFam Probable serine/threonine-protein kinase PBL8 161 377 - -
Vifa1g01812 410 MobiDBLite consensus disorder prediction 365 410 - -
Vifa1g01812 410 MobiDBLite consensus disorder prediction 14 56 - -
Vifa1g01812 410 PANTHER OS01G0588500 PROTEIN-RELATED 46 361 - -
Vifa1g01812 410 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Vifa1g01812 410 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Vifa1g01812 410 MobiDBLite consensus disorder prediction 17 40 - -
Vifa1g01812 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vifa1g01812 410 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Vifa1g01812 410 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01812 410 Pfam Protein tyrosine and serine/threonine kinase 79 355 IPR001245 GO:0004672|GO:0006468
Vifa1g01812 410 SUPERFAMILY Protein kinase-like (PK-like) 46 354 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01812 Vifa-Chr1 295133169 295135401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01812 1 365 Glycoside Hydrolase AT3G07070 45.745 1.76e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g01812 PK_Tyr_Ser-Thr 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01812 - - gmx:100775335 664.84