LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01809	ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTAGAAGGACTCCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCGTGCAGTGTTTAGGAATACATCGAAGTCTTGGGGTGCATATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGGTAGAAGAGAAAAAGAATACTTTTGAAGAAAGGAGGAAAATCCAACAATCAAATGCAAATACTGCTACTAGAATTAGTATTCTTGCTCCTCCCAAAGGACATGTTCAGGTAGCTCCTGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCCGGTGCCACAAGTGCAAGCTGAAACATCACAGACAACTGGCACAGTTCATGATCCCCCTCCCAAAGTTGATTTTTCAACGGATCTTTTTGACATGTTGTCTATGGATGATCCAAATGATAAGAGAACTGCTTTGACATACATTGATAATAAGGATGGAACCTGGCATAGAGCTAGCAAAGGTGCTCCTGAGCAGATTATAGAATTGTGTAACATGAGAGAAGATGCTCAAAAGAAGATCCATTCCATGATTGAAAAGTTCGCAGAAAGAGGGCTACGTTCACTTGGTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAGGAAAGTGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCGGTGTTTGATCCTCCTAGGCATGACAGTGCTGAGACCATTAGACAAGCTCTTAACCTCGGTGTTAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAAACTGGTAGGAGACTTGGTATGGGAACCAATATGTATCCTTCTGCTACATTGCTTGGTCTAGACAAAGATTCAAGTGTGGCTTCAATGCCAGTTGAAGAGCTTATTGAGAAGGCAGATGGATTTTCCGGAGTTTCCCAGAACATAAATATGAAATTGTGA	1188	0.4158	MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICVQCLGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLVEEKKNTFEERRKIQQSNANTATRISILAPPKGHVQVAPVAKHQHIEKVEPPVPQVQAETSQTTGTVHDPPPKVDFSTDLFDMLSMDDPNDKRTALTYIDNKDGTWHRASKGAPEQIIELCNMREDAQKKIHSMIEKFAERGLRSLGVARQEVPEKTKESAGAPWQFVGLLSVFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGLDKDSSVASMPVEELIEKADGFSGVSQNINMKL	395

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01809	395	CDD	ArfGap	19	117	-	-
	Vifa1g01809	395	Gene3D	-	310	388	IPR023214	-
	Vifa1g01809	395	FunFam	Membrane H(+)-ATPase1	249	309	-	-
	Vifa1g01809	395	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Vifa1g01809	395	Gene3D	-	223	309	IPR023299	GO:0000166
	Vifa1g01809	395	SMART	arf_gap_3	16	130	IPR001164	GO:0005096
	Vifa1g01809	395	SUPERFAMILY	HAD-like	301	353	IPR036412	-
	Vifa1g01809	395	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	1	256	IPR044520	GO:0005096
	Vifa1g01809	395	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Vifa1g01809	395	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01809	Vifa-Chr1	294324332	294325573	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01809	223	387	Primary Pumps ATPases	AT2G18960	80.000	3.95e-85	275

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01809	K12486		-	gmx:100807561	374.4

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