Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01809 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTAGAAGGACTCCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCGTGCAGTGTTTAGGAATACATCGAAGTCTTGGGGTGCATATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGGTAGAAGAGAAAAAGAATACTTTTGAAGAAAGGAGGAAAATCCAACAATCAAATGCAAATACTGCTACTAGAATTAGTATTCTTGCTCCTCCCAAAGGACATGTTCAGGTAGCTCCTGTGGCTAAACATCAGCATATTGAGAAAGTGGAACCTCCGGTGCCACAAGTGCAAGCTGAAACATCACAGACAACTGGCACAGTTCATGATCCCCCTCCCAAAGTTGATTTTTCAACGGATCTTTTTGACATGTTGTCTATGGATGATCCAAATGATAAGAGAACTGCTTTGACATACATTGATAATAAGGATGGAACCTGGCATAGAGCTAGCAAAGGTGCTCCTGAGCAGATTATAGAATTGTGTAACATGAGAGAAGATGCTCAAAAGAAGATCCATTCCATGATTGAAAAGTTCGCAGAAAGAGGGCTACGTTCACTTGGTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAGGAAAGTGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCGGTGTTTGATCCTCCTAGGCATGACAGTGCTGAGACCATTAGACAAGCTCTTAACCTCGGTGTTAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAAACTGGTAGGAGACTTGGTATGGGAACCAATATGTATCCTTCTGCTACATTGCTTGGTCTAGACAAAGATTCAAGTGTGGCTTCAATGCCAGTTGAAGAGCTTATTGAGAAGGCAGATGGATTTTCCGGAGTTTCCCAGAACATAAATATGAAATTGTGA 1188 0.4158 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICVQCLGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLVEEKKNTFEERRKIQQSNANTATRISILAPPKGHVQVAPVAKHQHIEKVEPPVPQVQAETSQTTGTVHDPPPKVDFSTDLFDMLSMDDPNDKRTALTYIDNKDGTWHRASKGAPEQIIELCNMREDAQKKIHSMIEKFAERGLRSLGVARQEVPEKTKESAGAPWQFVGLLSVFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGLDKDSSVASMPVEELIEKADGFSGVSQNINMKL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01809 395 CDD ArfGap 19 117 - -
Vifa1g01809 395 Gene3D - 310 388 IPR023214 -
Vifa1g01809 395 FunFam Membrane H(+)-ATPase1 249 309 - -
Vifa1g01809 395 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vifa1g01809 395 Gene3D - 223 309 IPR023299 GO:0000166
Vifa1g01809 395 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vifa1g01809 395 SUPERFAMILY HAD-like 301 353 IPR036412 -
Vifa1g01809 395 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 256 IPR044520 GO:0005096
Vifa1g01809 395 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa1g01809 395 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa1g01809 395 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa1g01809 395 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vifa1g01809 395 FunFam Plasma membrane ATPase 301 394 - -
Vifa1g01809 395 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vifa1g01809 395 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vifa1g01809 395 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 227 315 IPR023299 GO:0000166
Vifa1g01809 395 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01809 Vifa-Chr1 294324332 294325573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01809 223 387 Primary Pumps ATPases AT2G18960 80.000 3.95e-85 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01809 K12486 - gmx:100807561 374.4