Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01804 ATGAGAAAGCCTTGTTGTGACAAAGAAAACATCAATAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTTATTGATTATATACAAGTTCATGGTGAAGGATGTTGGGGTTCCATTCCTCAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGTTGTAGATTAAGATGGTTAAACTACTTACGACCAGATATCAAACGTGGAATCTTCGCACAAGATGAAGAAGATCTCGTCATTAAACTCCATGCCCTCCTTGGGAATCGGTGGGCACTCATAGCTGGAAGATTGCCAGGACGTACAGATAATGAGGTGAAGAACTATTGGAATTCTCATATTCGTAGAAAGCTAATAAAAATGGGAATTGATCCAAATAATCACAAGTTGCACAAAGGCTTTCCTAGTAATAATCCTCATGTTTCTATTGTTGGCACATCATCATGTGACGAGTCCATGAACAAAGATAATAATAAAGTCTCCTTCAACAAATCGTGTGATGCTATCACAAAGAAAGAAGCATCAACAAATAATTCTTCATCCTCTTTGAATCTTGACTTAACCATTGCATTACCTTGGAATGATTGTGAGTCTCAGAAGACTATTGATCTTAATTGTTAA 612 0.3758 MRKPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWGSIPQAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLVIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGFPSNNPHVSIVGTSSCDESMNKDNNKVSFNKSCDAITKKEASTNNSSSSLNLDLTIALPWNDCESQKTIDLNC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01804 203 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vifa1g01804 203 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vifa1g01804 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vifa1g01804 203 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 174 - -
Vifa1g01804 203 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vifa1g01804 203 CDD SANT 71 111 IPR001005 -
Vifa1g01804 203 CDD SANT 15 60 IPR001005 -
Vifa1g01804 203 FunFam MYB-related transcription factor 12 65 - -
Vifa1g01804 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vifa1g01804 203 SMART sant 65 113 IPR001005 -
Vifa1g01804 203 SMART sant 12 62 IPR001005 -
Vifa1g01804 203 Gene3D - 68 134 - -
Vifa1g01804 203 FunFam MYB transcription factor 67 128 - -
Vifa1g01804 203 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vifa1g01804 203 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Vifa1g01804 203 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01804 Vifa-Chr1 293177610 293178718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01804 2 189 MYB Transcription Factor Family AT4G38620 51.208 6.44e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01804 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01804 K09422 - gmx:100306391 300.827