Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01799 ATGGCCAAAAAATCTGAACGCATCCAAGACCATAAAACTTCAAGTGTTGAAGAAAGCAACACTAACATCATGCAACTTTGTTTATCAAATCATACCATTACCTTGACACAAAAGGTGATTGCAGAATTCATTGGAACATATTTTGTGGTATTTGCTGGTTGTGGTGTTATAGCAGTGAACAAAATTTATGGCTCTGTGACATTTCCAGGGATTTGTATCACTTGGGGACTTATTGTAATGGTAATGTGTTACTCGGTTGGTCATATATCTGGTGGGCACTTCAACCCTGCTGTTACCATCACTTGGGCCATCTTTCGCCGGATCCCGATTAAAGAGGCTCCACTATACATTCTTGCTCAATTGTCTGGATCAATACTTGCGAGTGGCACATTGTCTCTAATGTTTGAGATCACATCCGAAACTCATTTTGGAACGGTACCAGTTGGATCAAATGCTCAATCTTTAGTTATTGAAATCATCACCAGTTTTCTCTTATTGTTTGTCGTTTCAGCAATAGCCACGGACGAAAGAGTGGTGAATAACTTGACAGGTGTTGCAGTTGGAATGACTATAATGTTGAATGTCTTTATTGCTGGGCCTGTATCAGGGGCATCTATGAACCCAGCAAGAACTATTGGTGCTGCCCTTGTGGTACATGTTTACAAAGGGTTATGGATATACATTGTTGGTCCAATAGTTGGAGCTATTGGTGGAGCAGTTGCCTATAACTTTCTTAGATCCATAGAGAAACCACATTCAGAGTTACCATTGAGGAACATAGTTGCAGTTTGA 792 0.4028 MAKKSERIQDHKTSSVEESNTNIMQLCLSNHTITLTQKVIAEFIGTYFVVFAGCGVIAVNKIYGSVTFPGICITWGLIVMVMCYSVGHISGGHFNPAVTITWAIFRRIPIKEAPLYILAQLSGSILASGTLSLMFEITSETHFGTVPVGSNAQSLVIEIITSFLLLFVVSAIATDERVVNNLTGVAVGMTIMLNVFIAGPVSGASMNPARTIGAALVVHVYKGLWIYIVGPIVGAIGGAVAYNFLRSIEKPHSELPLRNIVAV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01799 263 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 SUPERFAMILY Aquaporin-like 32 253 IPR023271 -
Vifa1g01799 263 Gene3D Glycerol uptake facilitator protein. 1 254 IPR023271 -
Vifa1g01799 263 PANTHER AQUAPORIN NIP2-1 11 249 IPR034294 -
Vifa1g01799 263 NCBIfam MIP family channel protein 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 Pfam Major intrinsic protein 32 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01799 263 ProSitePatterns MIP family signature. 93 101 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01799 Vifa-Chr1 292340481 292342143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01799 1 255 Major Intrinsic Protein MIP AT5G37810 58.779 1.23e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01799 K09874 - gmx:100791338 341.658