Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01796 ATGGCACTGACCAACAACAATATTCTATATAGTTCAATCCATAACACCAAGTTCCAAACTTGTGTTTTTGATGAGACAATAATGGAGATTAACACTGTTATGTCTCATGGTATCAATGAAGAAGAAGAAGATGGTTCACAAAGCAATGAATCAGCTTCTGCTTCTGCTTCTGCTTCTGCCACTACTCATTCTTCTACCAAAAAAGGTTTTCAGCAGAGCTGGAATATGGCTTCCAATGAGAACAATTTGCAACAATGGAATCATCTTAGTCCTAAAAGCATCACAAACTTGTGCATGGTGCAAGGTTTCAATGGCTTTGAAACTTCTAGTGGAAGCTATGGATCCATATTCAATAGTGCTAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGCTATACTCAGATCCAAATGTCCCTTGTGATGAGGATGATAGGTTAATAAAAGAGTCGGAAACTCATTATTCCTTCGCGAAGAAGCGTTCTTCAATGGGAGAGAACATGCAACCTGCTAATGCAAAGAAGCCATGCACAACTGCAAGTAAAACGGCGAAACCGAAGTCAAATCCATCCAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTTCCCAACGGTTCCAAGGTTGATTTGGTTACTATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTGAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGAAATACTTTCATCTCAAAGATGA 834 0.3945 MALTNNNILYSSIHNTKFQTCVFDETIMEINTVMSHGINEEEEDGSQSNESASASASASATTHSSTKKGFQQSWNMASNENNLQQWNHLSPKSITNLCMVQGFNGFETSSGSYGSIFNSAKEKQNGESSCGWLYSDPNVPCDEDDRLIKESETHYSFAKKRSSMGENMQPANAKKPCTTASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDEILSSQR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01796 277 FunFam Transcription factor bHLH83 188 247 - -
Vifa1g01796 277 SMART finulus 196 245 IPR011598 GO:0046983
Vifa1g01796 277 MobiDBLite consensus disorder prediction 160 196 - -
Vifa1g01796 277 MobiDBLite consensus disorder prediction 159 202 - -
Vifa1g01796 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 40 247 IPR045843 GO:0003700|GO:0006355
Vifa1g01796 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 248 IPR036638 GO:0046983
Vifa1g01796 277 MobiDBLite consensus disorder prediction 48 70 - -
Vifa1g01796 277 Pfam Helix-loop-helix DNA-binding domain 200 240 IPR011598 GO:0046983
Vifa1g01796 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Vifa1g01796 277 CDD bHLH_AtIND_like 191 253 - -
Vifa1g01796 277 MobiDBLite consensus disorder prediction 40 70 - -
Vifa1g01796 277 Gene3D - 185 247 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01796 Vifa-Chr1 292258509 292259906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01796 86 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 55.440 2.84e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01796 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01796 - - gmx:106795957 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01796 1 292258509 292259906 Vifa1g01796 1 292258509 292259906 ECH