Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01787 ATGGAGAATACCAGTGGTTTGAGAAAGGGTGCATGGACTTATGAGGAAGACAACCTTCTCAAGGCTTGCATTAATAAGTATGGTGAAGGAAAATGGCATTTAGCTCCTCAAAGAGCAGGATTGAATAGATGCCGAAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCTACCATAAATAGAGAGAGCTTTTCTGAGGATGAAGTTGATATGATACTCAGGTTACACAAACTCCTAGGGAATAGATGGTCATTGATTGCTGGAAGACTTCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCAAACACATTTACGCAAGAAGATGGCTTCAAACAAAGAGAAAGATACAGAAAAAATACTGAAAGAATCCATGAAAACTCATCAAGTTATTAAACCTCAACCTCGTACTTTCTCATATCATTCACCTCGTTTGAATGCAATACCAGCTTTAAATAATGATTGTAAAGTTCCCATAGGCAATGATGACTCAAAACATATGGTTCTGAATTACCAAAATGGTGGGAATTGTGCTTCTTCTTCACAACCAAGTCTTGGTAATGCCTCTATACCAAGTGCAATGTGGTCAGACAGTTTGTGGAACTTGGAGGAGCAAGTTGGCAGTGACACGGTTGGGTCATGCTCTTCACTGCAAGAGGATTTCAACTTCAATATGGAGTTGCCAAATGCTGATGACTCCTTTTGGAATTTAAACATTTGCGATTTCGATATTCTTTTGGATCTTTAG 753 0.3838 MENTSGLRKGAWTYEEDNLLKACINKYGEGKWHLAPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWSLIAGRLPGRTANDVKNYWQTHLRKKMASNKEKDTEKILKESMKTHQVIKPQPRTFSYHSPRLNAIPALNNDCKVPIGNDDSKHMVLNYQNGGNCASSSQPSLGNASIPSAMWSDSLWNLEEQVGSDTVGSCSSLQEDFNFNMELPNADDSFWNLNICDFDILLDL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01787 250 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vifa1g01787 250 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vifa1g01787 250 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vifa1g01787 250 CDD SANT 64 107 IPR001005 -
Vifa1g01787 250 FunFam Myb transcription factor 9 61 - -
Vifa1g01787 250 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Vifa1g01787 250 CDD SANT 11 56 IPR001005 -
Vifa1g01787 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Vifa1g01787 250 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vifa1g01787 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 166 - -
Vifa1g01787 250 Gene3D - 64 136 - -
Vifa1g01787 250 SMART sant 8 58 IPR001005 -
Vifa1g01787 250 SMART sant 61 109 IPR001005 -
Vifa1g01787 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vifa1g01787 250 Gene3D - 2 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01787 Vifa-Chr1 290801898 290802792 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01787 2 172 MYB Transcription Factor Family AT1G66370 52.577 2.43e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01787 Myb_DNA-binding 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01787 - K16166 mtr:11424892 328.561