Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01784 ATGGAGAAAAGTAAGAGTAACTGTGTGAGAAAAGGTGCATGGATATATGAAGAAGACAAGTTACTCAAAGCTTGTATTGAAAAGTATGGTGAAGGAAAATGGCATCTAGTTCCACAAAGAGCAGGATTGAATAGGTGCCGGAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAACCCCAGTATCAACAGAGAGAGTTTTGCTGAGGATGAAGTTGATATGATCTTAAGGTTACACAAACTCTTAGGGAACAGATGGTCATTAATTGCTGCAAGGCTTTCGGGAAGAACCGCTAATGGTGTGAAGAATTATTGGCACACACATTTAGGCAAGAAGATGATGGTTTCTAAAGAGCTAAAAGAAAAGAAAGAAAAATGTAACAAAATTATGAAAGCTCATGAAATTATTAAACCTCAACCTCGAACTTTCGCATCCTATTCACCATGGTTGAATGAGAAACATATTGCAAAACCAATTGTGGCGGTTTCAACTAAAGATGCTAGTGTGGCGAAAGATAGTGACATAGATACTCTGGTGCCAATTAATGATAATGGAGATCATGCTATGTGGTGGGAAAGTTTGTTGAACTTGAGCAATGATAAAATTGGCTCAAGCTCTTTACTACAAGAAGAGGGAAATTCAATTTTAGAGTTACCAAATGTTGAGAACATTTTTATTGAAAGATCCAATGTCAATGATTTTCATTGGGATTCCGTCCTTTGTGAATTTGATTCTCTTTGA 741 0.3603 MEKSKSNCVRKGAWIYEEDKLLKACIEKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPSINRESFAEDEVDMILRLHKLLGNRWSLIAARLSGRTANGVKNYWHTHLGKKMMVSKELKEKKEKCNKIMKAHEIIKPQPRTFASYSPWLNEKHIAKPIVAVSTKDASVAKDSDIDTLVPINDNGDHAMWWESLLNLSNDKIGSSSLLQEEGNSILELPNVENIFIERSNVNDFHWDSVLCEFDSL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01784 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vifa1g01784 246 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 133 - -
Vifa1g01784 246 CDD SANT 17 58 IPR001005 -
Vifa1g01784 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa1g01784 246 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vifa1g01784 246 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vifa1g01784 246 SMART sant 10 60 IPR001005 -
Vifa1g01784 246 SMART sant 63 111 IPR001005 -
Vifa1g01784 246 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Vifa1g01784 246 Gene3D - 65 135 - -
Vifa1g01784 246 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vifa1g01784 246 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Vifa1g01784 246 CDD SANT 69 109 IPR001005 -
Vifa1g01784 246 FunFam Myb transcription factor 11 63 - -
Vifa1g01784 246 Gene3D - 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01784 Vifa-Chr1 290098419 290099614 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01784 9 195 MYB Transcription Factor Family AT1G66370 51.220 1.26e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01784 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01784 - K09422 tpra:123921946 321.627