Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01778 ATGGAGAGAAGTAAGAGTAGAGGTGTTAGAAAAGGTGCATGGACATATGAAGAAGACAAGTTACTCAAAGCTTGTATTGACAAGTATGGTGAAGGAAAATGGCATTTAATTCCACAAAGAGCAGGATTGAATAGGTGCAGGAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAACCCCACCATTAATAGAGAGAGTTTTTCTGAGGATGAAGTTGATATGATTCTAAGGTTACACAAACTCTTAGGGAACAGATGGGCATTAATTGCTGCAAGGCTTCCTGGTAGAACATCTAATGATGTGAAGAATTATTGGCACACACACTTGCGGAAGAAGATAATTTCAAGAAAATTAGAAGAAAATAAAGCAAAGGAGAAACATAAGGAAAGCATGAAAGTTCATGAAATTTTTAAACCTGAACCTCGAACTTTTTCATCTCATTCCCCATGGTTGAATGGGAAACATAGTATTGTAAAACCAATAGTTACATTTTCAAGTAAAGATAGTATTGTTGCTAAAGATGAAAGTAGTGTCCTACCAGTTAATGGTGATGGAGACTATGATGTACCCCCATCCCCATCTCTTGAAAACTCTACAGCCATGTGGTGGGAAAGTTTGTTGAACGAGAGCAATGACAAAATTGGCCCATGCTGTTTATTACAAGAGGAGAGAGATTCCATTTTAGAGTTATCAAATGTTGACAACTTTTTTATCGGAGGTCCCACTAATGTAGCTGATTGTTATTGGGATTCTAGTCTGTCTCAATTTGATTCCCTTTTAGATATTTTAAATTAG 795 0.3597 MERSKSRGVRKGAWTYEEDKLLKACIDKYGEGKWHLIPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWALIAARLPGRTSNDVKNYWHTHLRKKIISRKLEENKAKEKHKESMKVHEIFKPEPRTFSSHSPWLNGKHSIVKPIVTFSSKDSIVAKDESSVLPVNGDGDYDVPPSPSLENSTAMWWESLLNESNDKIGPCCLLQEERDSILELSNVDNFFIGGPTNVADCYWDSSLSQFDSLLDILN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01778 264 Gene3D - 65 137 - -
Vifa1g01778 264 SMART sant 63 111 IPR001005 -
Vifa1g01778 264 SMART sant 10 60 IPR001005 -
Vifa1g01778 264 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vifa1g01778 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Vifa1g01778 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Vifa1g01778 264 Gene3D - 2 64 - -
Vifa1g01778 264 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Vifa1g01778 264 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vifa1g01778 264 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vifa1g01778 264 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vifa1g01778 264 CDD SANT 66 109 IPR001005 -
Vifa1g01778 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 134 - -
Vifa1g01778 264 CDD SANT 13 58 IPR001005 -
Vifa1g01778 264 FunFam Myb transcription factor 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01778 Vifa-Chr1 289065782 289066815 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01778 7 216 MYB Transcription Factor Family AT1G66370 50.000 6.18e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01778 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01778 - K16166 tpra:123921946 369.777