Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01773 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGAAATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCCCTACCGACTGCTGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACTAACAGAGAAATTGATGGTCAAATACCCAATTACCCGAGCTTGCCACCGCAGTTGATATGCCAGCTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTTCGAATTATTTTTGCAAGACATTGACTGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCGGAGAAAGTTTTTCCTCCATTGGATTTCACACAGCAACCTCCTGCACAAGAACTGATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGAGGACAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAGCTTCTTTTGGGAATACGTCGAGCCAGTCGGCCGCAAACTGTTATGCCGTCATCAGTTCTTTCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCAGCCCATGCTTCCGCAACTAATAGCTGTTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCTTCCGAGTTTGTCATACAACTTTCAAAATATATCAAAGCTGTTTACCATACACGTGTTTCTGTTGGTATGCGTTTTAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCGAATTCTCATTGGAGGTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAGCCTCGAGTATCATTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCGCTATTTCCCCTTAGATTGAAACGACCATGGCATCCCGGAACTTCTTCTTTTCTCGATGGCAGAGACGACGCAACAAATGGACTAATGTGGTTGCGAGGCGGTCCCGGAGACCATGGTCTTAATTCCATGAATTTTCAAGGTGCTGGTTTGATGCCCTGGATGCAGCAAAGACTCGATCCCGCCTTACTTGGAAATGATCATAATCAGCAATACCAAGCCATGTTAGCTGGTGGTGGTGGTTTGCAGAATCAAGGGAATGCTACTGATCTGTTAAGGCAACAAATGATGAGTTTTCAACAACCTTTCAATTATCTTCAACAATCAGGAAACCTCAGTCCTTTGCAGCTTCAGCAACAGCAAACAATTCAACAGTTCGCGACAAATAATATCATGCAACCACAAAGTCAAGTATTGGCAGAGAACCTGTCTCAGCACATCCTTCAGAAACCACACAACAATCGAGAAAACCAAACACAACAACCACAACAGCAGCAAACTTATCAAGATACACTTCTAATTCAAGGTGATCCACTCCATCAGAAGCAACACGCAAGTTTGCCTTCACCGTCATATTCGAAACCGGATTTCTTAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCGCCGGGTCAAAACATGCTTGGTTCACTTTGTTCTGAAGGGAGTGGCAATCTCTTGAATTTATCAAGTGGTCATTCTGTGCTGACTGAACAGTTACCTCAACAATCATGGGCATCAAAGTATTCACCTTCACAGGTCGATGGCATTGGAAACTCAATGTCGCACGGGCAGTATTCCGGAAGAGATACATCACTCGTGCCACCACATTGCAACTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAATATTGATTCGTCTGGCCTTCTGCTTCCTACCACTGTTCCTCGTTATTCTACTGCACCAGCTGATGCCGATGCATCGACAATGCCATTAGGAGAGTCTAGTTTCCAGGGTTCTCCATATCATTGCATGCAGGATTCATCAGATCTGTTGCAAAGTGTGGGGCAAATCGATGCTCAAAACCAGATGCCGACATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCCCTAGACATCTCGCGGTTCAGCAGCTATCACGAACTGCGGGAGGAGTTGGCCCAGATGTTTGGAATTGAGGGGAATTTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCTCCTGAAGATATGCAGAAAATGGGAGAACAAGCCATTGAATCCCTTGGTCCAAGATCTGGACAAAGGCAGAGTAACACTGGTGCAGAATCTCATGACATTGTTTCATCATTAGGCTCACTCGAATACTGA 2532 0.4475 MKLSTSGMSQQGNEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFNPRASPSEFVIQLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGPGDHGLNSMNFQGAGLMPWMQQRLDPALLGNDHNQQYQAMLAGGGGLQNQGNATDLLRQQMMSFQQPFNYLQQSGNLSPLQLQQQQTIQQFATNNIMQPQSQVLAENLSQHILQKPHNNRENQTQQPQQQQTYQDTLLIQGDPLHQKQHASLPSPSYSKPDFLDSGMKFAASVSPGQNMLGSLCSEGSGNLLNLSSGHSVLTEQLPQQSWASKYSPSQVDGIGNSMSHGQYSGRDTSLVPPHCNSDAQNSVLFGVNIDSSGLLLPTTVPRYSTAPADADASTMPLGESSFQGSPYHCMQDSSDLLQSVGQIDAQNQMPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGNFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDMQKMGEQAIESLGPRSGQRQSNTGAESHDIVSSLGSLEY 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01773 843 ProSiteProfiles PB1 domain profile. 720 804 IPR000270 GO:0005515
Vifa1g01773 843 MobiDBLite consensus disorder prediction 817 843 - -
Vifa1g01773 843 SUPERFAMILY CAD & PB1 domains 720 794 - -
Vifa1g01773 843 Gene3D - 126 229 IPR015300 -
Vifa1g01773 843 SMART B3_2 128 230 IPR003340 GO:0003677
Vifa1g01773 843 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vifa1g01773 843 FunFam Auxin response factor 715 809 - -
Vifa1g01773 843 Pfam AUX/IAA family 715 805 IPR033389 -
Vifa1g01773 843 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vifa1g01773 843 Gene3D - 715 809 - -
Vifa1g01773 843 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vifa1g01773 843 FunFam Auxin response factor 292 364 - -
Vifa1g01773 843 Gene3D - 292 364 - -
Vifa1g01773 843 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vifa1g01773 843 FunFam Auxin response factor 126 230 - -
Vifa1g01773 843 MobiDBLite consensus disorder prediction 817 834 - -
Vifa1g01773 843 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g01773 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 809 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01773 Vifa-Chr1 288255705 288263219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01773 98 817 B3 DNA Binding Superfamily AT5G37020 67.764 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g01773 AUX_IAA 2.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01773 - - gmx:100780393 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01773 1 288255705 288263219 Vifa1g01773 1 288255705 288263219 ECH