Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01772 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGAAATGAAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCCCTACCGACTGCTGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACTAACAGAGAAATTGATGGTCAAATACCCAATTACCCGAGCTTGCCACCGCAGTTGATATGCCAGCTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTTCGAATTATTTTTGCAAGACATTGACTGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCGGAGAAAGTTTTTCCTCCATTGGATTTCACACAGCAACCTCCTGCACAAGAACTGATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGAGGACAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAGCTTCTTTTGGGAATACGTCGAGCCAGTCGGCCGCAAACTGTTATGCCGTCATCAGTTCTTTCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCAGCCCATGCTTCCGCAACTAATAGCTGTTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCTTCCGAGTTTGTCATACAACTTTCAAAATATATCAAAGCTGTTTACCATACACGTGTTTCTGTTGGTATGCGTTTTAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCGAATTCTCATTGGAGGTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAGCCTCGAGTATCATTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCGCTATTTCCCCTTAGATTGAAACGACCATGGCATCCCGGAACTTCTTCTTTTCTCGATGGCAGAGACGACGCAACAAATGGACTAATGTGGTTGCGAGGCGGTCCCGGAGACCATGGTCTTAATTCCATGAATTTTCAAGGTGCTGGTTTGATGCCCTGGATGCAGCAAAGACTCGATCCCGCCTTACTTGGAAATGATCATAATCAGCAATACCAAGCCATGTTAGCTGGTGGTGGTGGTTTGCAGAATCAAGGGAATGCTACTGATCTGTTAAGGCAACAAATGATGAGTTTTCAACAACCTTTCAATTATCTTCAACAATCAGGAAACCTCAGTCCTTTGCAGCTTCAGCAACAGCAAACAATTCAACAGTTCGCGACAAATAATATCATGCAACCACAAAGTCAAGTATTGGCAGAGAACCTGTCTCAGCACATCCTTCAGAAACCACACAACAATCGAGAAAACCAAACACAACAACCACAACAGCAGCAAACTTATCAAGATACACTTCTAATTCAAGGTGATCCACTCCATCAGAAGCAACACGCAAGTTTGCCTTCACCGTCATATTCGAAACCGGATTTCTTAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCGCCGGGTCAAAACATGCTTGGTTCACTTTGTTCTGAAGGGAGTGGCAATCTCTTGAATTTATCAAGTGGTCATTCTGTGCTGACTGAACAGTTACCTCAACAATCATGGGCATCAAAGTATTCACCTTCACAGGTCGATGGCATTGGAAACTCAATGTCGCACGGGCAGTATTCCGGAAGAGATACATCACTCGTGCCACCACATTGCAACTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAATATTGATTCGTCTGGCCTTCTGCTTCCTACCACTGTTCCTCGTTATTCTACTGCACCAGCTGATGCCGATGCATCGACAATGCCATTAGGAGAGTCTAGTTTCCAGGGTTCTCCATATCATTGCATGCAGGATTCATCAGATCTGTTGCAAAGTGTGGGGCAAATCGATGCTCAAAACCAGATGCCGACATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCCCTAGACATCTCGCGGTTCAGCAGCTATCACGAACTGCGGGAGGAGTTGGCCCAGATGTTTGGAATTGAGGGGAATTTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCTCCTGAAGATATGCAGAAAATGGGAGAACAAGCCATTGAATCCCTTGGTCCAAGATCTGGACAAAGGCAGAGTAACACTGGTGCAGAATCTCATGACATTGTTTCATCATTAGGCTCACTCGAATACTGA 2529 0.4472 MKLSTSGMSQQGNEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFNPRASPSEFVIQLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGPGDHGLNSMNFQGAGLMPWMQQRLDPALLGNDHNQQYQAMLAGGGGLQNQGNATDLLRQQMMSFQQPFNYLQQSGNLSPLQLQQQQTIQQFATNNIMQPQSQVLAENLSQHILQKPHNNRENQTQQPQQQQTYQDTLLIQGDPLHQKQHASLPSPSYSKPDFLDSGMKFAASVSPGQNMLGSLCSEGSGNLLNLSSGHSVLTEQLPQQSWASKYSPSQVDGIGNSMSHGQYSGRDTSLVPPHCNSDAQNSVLFGVNIDSSGLLLPTTVPRYSTAPADADASTMPLGESSFQGSPYHCMQDSSDLLQSVGQIDAQNQMPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGNFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDMQKMGEQAIESLGPRSGQRQSNTGAESHDIVSSLGSLEY 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01772 842 Gene3D - 125 228 IPR015300 -
Vifa1g01772 842 SMART B3_2 127 229 IPR003340 GO:0003677
Vifa1g01772 842 Gene3D - 714 808 - -
Vifa1g01772 842 FunFam Auxin response factor 291 363 - -
Vifa1g01772 842 Pfam AUX/IAA family 714 804 IPR033389 -
Vifa1g01772 842 ProSiteProfiles PB1 domain profile. 719 803 IPR000270 GO:0005515
Vifa1g01772 842 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vifa1g01772 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 808 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g01772 842 SUPERFAMILY CAD & PB1 domains 719 793 - -
Vifa1g01772 842 MobiDBLite consensus disorder prediction 816 833 - -
Vifa1g01772 842 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Vifa1g01772 842 FunFam Auxin response factor 125 229 - -
Vifa1g01772 842 Gene3D - 291 363 - -
Vifa1g01772 842 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vifa1g01772 842 MobiDBLite consensus disorder prediction 816 842 - -
Vifa1g01772 842 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g01772 842 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vifa1g01772 842 FunFam Auxin response factor 714 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01772 Vifa-Chr1 288255705 288263219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01772 97 816 B3 DNA Binding Superfamily AT5G37020 67.764 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g01772 AUX_IAA 2.2e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01772 1 288255705 288263219 Vifa1g01772 1 288255705 288263219 ECH
Vifa2g01446 2 391414269 391420536 Vifa1g01772 1 288255705 288263219 PCT