Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01770 ATGGTAGTTATTGAGCATCAGGAAAGTGAGGATCGAAACCCTAATCCCTCAAACACCGGTACAAGTAACGACGCTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGACACCAATGACGGTGGTGCAATCAATCACCAAGAACAGGAACATCTTCAGCCACACAAGCAACACACTGAGCAAGAGCAGGACCAGGAGCATGGTGATCATCAGAAAATCATTTCCTCTGACGATGCTTCTATCAACGAAGAGGAACTGAAACAGAAAGCACTGGTTCAAGCAAATGAAGCAAAAGTAGAAGGGAACAAACTTTTTGTAGATGCTAAGTATGAGGAGGCATTAACACAATATGAACTAGCTTTACAAGTTGCGTCAGACATGCCTTCATCGGTGGAGATACGATCAATATGCCATGCTAATCGTGGTGTGTGCTTTCTGAAAATGGGGAAATATGACAATACTGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCTACCTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAACTTGAGCATTTTGAAGAGGCCATCGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCTAGCTGGGAAAGCCATTCGCCGGCTAGAGCCCCTTGCTGCAGTAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTCTTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACCGGTTCCTATTCTGTCTCATTCAACCAGTAA 804 0.4353 MVVIEHQESEDRNPNPSNTGTSNDASDGFETASDTDLDTNDGGAINHQEQEHLQPHKQHTEQEQDQEHGDHQKIISSDDASINEEELKQKALVQANEAKVEGNKLFVDAKYEEALTQYELALQVASDMPSSVEIRSICHANRGVCFLKMGKYDNTVKECTKALELNPTYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDLAGKAIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFNQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01770 267 SUPERFAMILY TPR-like 95 207 IPR011990 GO:0005515
Vifa1g01770 267 MobiDBLite consensus disorder prediction 50 72 - -
Vifa1g01770 267 Pfam Tetratricopeptide repeat 138 169 IPR001440 GO:0005515
Vifa1g01770 267 Gene3D Tetratricopeptide repeat domain 48 234 IPR011990 GO:0005515
Vifa1g01770 267 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 4 267 - -
Vifa1g01770 267 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Vifa1g01770 267 SMART tpr_5 95 128 IPR019734 GO:0005515
Vifa1g01770 267 SMART tpr_5 136 169 IPR019734 GO:0005515
Vifa1g01770 267 SMART tpr_5 170 203 IPR019734 GO:0005515
Vifa1g01770 267 MobiDBLite consensus disorder prediction 13 47 - -
Vifa1g01770 267 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Vifa1g01770 267 MobiDBLite consensus disorder prediction 1 72 - -
Vifa1g01770 267 Pfam Tetratricopeptide repeat 171 203 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01770 Vifa-Chr1 287537103 287540504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01770 95 226 Calmodulin-binding Proteins AT3G25230 38.571 6.53e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01770 K24926 - gmx:100808386 380.178