Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01752 ATGGGGTGTTGTGTCTCAACAAGCTATAGAAGCAATGGCGAGGCGGGGTCTTCGTCTTGCTTAGAATTGGGACTATGTTGTCAGAAGAGGGAAAGGAAAACATTCTCTGATCATGTTGTTTCTCTGCATAAGTTGTCTTCTTTGCCGAACAGAATATTCGCGAATGGAAAGAGTCGGTCTTCTTGTATATTTACGCAGCAGGGGCGTAAGGGTGTTAATCAGGATGCCATGATTGTATGGGAAGATTTTGGGTCAGAAGATGTGATATTTTGTGGTGTTTTTGACGGCCATGGTCCACACGGTCACCTTGTCGCGCGCAGAGTTAGAGATTCATTACCGGTGAAACTGCTTTCATTCTTGCATTCTTCTGAATTCGGTAAAGCTTGTTTCAAGAGGGATGTAAAGCCTGAAAGTGGAGAGGCTGAGAATGATTTCTCTGCTGAGAATGAGGTGAATTCTATGTGGAGAGAAGCTTTCTTGAAGGCATACAAAGCTATGGACAAAGAGCTGAAGTCTCATGCAAATTTGGACTGTTTCTGTAGTGGAAGCACAGCAGTGAGTGTAGTGAAACAAGGATCAAATTTGTTCATGGGAAATATTGGTGATTCTAGAGCAATCATGGGATCCAAAGATAGCAATGACTTGATGGTAGCGATTCAGCTGACAGTTGATTTAAAACCTGATTTGCCAAGAGAAGAGGAAAGAATTAAAAGTTGCAAGGGTAGGGTATTTGCATTGCAAGATGAGCCAGAAGTTCCTAGGGTATGGTTACCTTTTGATAATGCACCTGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGATTACGGTGTGATTTCTGTACCGGAATTTACGCACCGGCTTCTCACTGATAAAGACCAGTTCATTGTTCTTGCCTCAGACGGGGTATGGGATGTTTTGAGCAATGAAGAGGTGGTGGACATAGTATCATCAGCACCGAGTCGAACGTCTGCAGCAAGGGTTCTGGTGGAATCCGCGGCACGAGAGTGGAAACTCAAATATCCAACTTCGAAAATGGATGATTGTGCTGTTGTGTGCCTATTTTTGGATGGAAAAATGGACTTAGAAGAATCTGATGGAGATGAACAATGCTATTCTTCTGCAACAACCCAGAGCTACAATCATTCAGGTAATCCAGTTGAGTCGGACAATGGTAAGAAATCCGAGCCTTCTTTGCGAAGAAACTTCACAGTGAGAACCTCAGAAGAAAACGAGACATTTGGAATACGAGGAGGAGAATCTATTGATGTTGAAGATGGAACATCATCAGCAGCAGATCAAAACTGGTTAGGTCTAGAGGGTGTCACGCGAGTAAACTCACTGGTACAACTTCCTAGATTTTCTGAAGAAAAGCCTAACTCTTGA 1395 0.4308 MGCCVSTSYRSNGEAGSSSCLELGLCCQKRERKTFSDHVVSLHKLSSLPNRIFANGKSRSSCIFTQQGRKGVNQDAMIVWEDFGSEDVIFCGVFDGHGPHGHLVARRVRDSLPVKLLSFLHSSEFGKACFKRDVKPESGEAENDFSAENEVNSMWREAFLKAYKAMDKELKSHANLDCFCSGSTAVSVVKQGSNLFMGNIGDSRAIMGSKDSNDLMVAIQLTVDLKPDLPREEERIKSCKGRVFALQDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISVPEFTHRLLTDKDQFIVLASDGVWDVLSNEEVVDIVSSAPSRTSAARVLVESAAREWKLKYPTSKMDDCAVVCLFLDGKMDLEESDGDEQCYSSATTQSYNHSGNPVESDNGKKSEPSLRRNFTVRTSEENETFGIRGGESIDVEDGTSSAADQNWLGLEGVTRVNSLVQLPRFSEEKPNS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01752 464 FunFam probable protein phosphatase 2C 52 51 362 - -
Vifa1g01752 464 ProSiteProfiles PPM-type phosphatase domain profile. 60 359 IPR001932 -
Vifa1g01752 464 SUPERFAMILY PP2C-like 54 361 IPR036457 -
Vifa1g01752 464 MobiDBLite consensus disorder prediction 369 433 - -
Vifa1g01752 464 CDD PP2Cc 59 359 IPR001932 -
Vifa1g01752 464 MobiDBLite consensus disorder prediction 372 395 - -
Vifa1g01752 464 Pfam Protein phosphatase 2C 86 336 IPR001932 -
Vifa1g01752 464 PANTHER PROTEIN PHOSPHATASE 60 357 IPR015655 GO:0004722|GO:0006470
Vifa1g01752 464 MobiDBLite consensus disorder prediction 396 410 - -
Vifa1g01752 464 Gene3D - 50 361 IPR036457 -
Vifa1g01752 464 SMART PP2C_4 49 357 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01752 Vifa-Chr1 285967312 285969091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01752 1 464 PP2C-type Phosphatase Gene Family AT1G03590 68.085 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01752 - - gmx:100788149 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01752 1 285967312 285969091 Vifa1g01752 1 285967312 285969091 ECH