Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01747 ATGGAGCAGGAACAACAAAGCTTTGAAAGCTTCCTAACATGGACATCACAGCTTGGAATATCAGACTCAACAACCACAAACCAATCTCAACACTCTCATTCCTCTTTGGGCCATTCTCTATGCGTTTCCATCTTTCCTAACTCTGGCGGTAGAGGTTTGGGTGCTGTGAGAGATCTTAGGAGGGGAGAACTTATTCTAAGAGTTCCAAAATCTGCTTTAATGACTACAGATAGTGTTATTACGGAAGATAAAAAGCTCTTCCTTGCTGTCAATAGACACTCTTCTCTCTCATCAGTTCAGATATTGACTGTTTGCTTGTTATACGAAGTCGGTAAAGGGAAGACTTCATTGTGGCATCCTTACCTCGTGCATTTACCACAAAGTTACGACTTGCTAGCCATGTTTGGTGAATTTGAGAAACAAGCACTGCAAGTGGATGAAGCTATTTGGGTCACAGAAAAAGCTGTACAAAAAGCCAAATCAGAATGGAAAGAAGCTCATGCTTTGATGGAAGATCTCATGTTTAAGCCCCAGCTTTTAACATTTAAGGCTTGGGTTTGGGCTGCGTCAACAATATCTTCCCGGACTTTGCATATACCATGGGATGAAGCTGGTTGTTTGTGTCCTATCGGCGACTTGTTTAATTATGATGCGCCTGGAGAGGACCTATCTGGTATTGAGGACATAGTGGCAGACGAAGAGCAGATTGATTTTCATTCTCAGAGACTAACAGACGGCGGGTTTGAGGAAGATGCTAATGCATATTGCCTATATGCTAGGGCAAATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACATACACAAATTTGGAGCTTCTTGAACACTATGGATTTCTCTTGCAAGAAAATTCAAATGACAAAATTTTCATCCCTTTGGAACCTGCTATGTACACTTCTACTTCATGGTCTAAGGAGTCACTCTATATCCATCATAACGGGAAGCCTTCATTTGCGCTACTAGCTGCGTTACGTTTGTGGGCAACCCCTCATACTAAGAGAAGGTCTGTCGGTCATCTTGCATACTCTGGTTCCCAACTGTCTACCGCCAATGAAATTATCGTTATGAAATGGTTGTCGAAAACGTGTGACACCGTCTTAAAGAACTTGCCAACATCTATTGAAGACGACACCATACTCGTGAATGCATTGGATAGTAATCAAAACTTTTTAACATTCATGGAGATTGCAAAACTTATGTCTTCCAAGAATGAATTATATAACTTCTTAGAAGCTCATAGTATATCGGACCCGCATAGTTTTAGTGATGTATTTTTATCGAAAAGAGTGAAAAGGTCAATGGACAGATGGAAATTAGCTGTGTTGTGGAGGCTCAGGTTTAAGAAAGTCCTTGTTGATTGTATCTCTTATTGCAATGGAATATTGGATTCTTTCATGAGATAA 1428 0.4048 MEQEQQSFESFLTWTSQLGISDSTTTNQSQHSHSSLGHSLCVSIFPNSGGRGLGAVRDLRRGELILRVPKSALMTTDSVITEDKKLFLAVNRHSSLSSVQILTVCLLYEVGKGKTSLWHPYLVHLPQSYDLLAMFGEFEKQALQVDEAIWVTEKAVQKAKSEWKEAHALMEDLMFKPQLLTFKAWVWAASTISSRTLHIPWDEAGCLCPIGDLFNYDAPGEDLSGIEDIVADEEQIDFHSQRLTDGGFEEDANAYCLYARANYKKGDQVLLCYGTYTNLELLEHYGFLLQENSNDKIFIPLEPAMYTSTSWSKESLYIHHNGKPSFALLAALRLWATPHTKRRSVGHLAYSGSQLSTANEIIVMKWLSKTCDTVLKNLPTSIEDDTILVNALDSNQNFLTFMEIAKLMSSKNELYNFLEAHSISDPHSFSDVFLSKRVKRSMDRWKLAVLWRLRFKKVLVDCISYCNGILDSFMR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01747 475 FunFam Protein SET DOMAIN GROUP 40 8 288 - -
Vifa1g01747 475 ProSiteProfiles SET domain profile. 38 274 IPR001214 GO:0005515
Vifa1g01747 475 SUPERFAMILY SET domain 37 293 IPR046341 -
Vifa1g01747 475 CDD SET_LSMT 49 288 - -
Vifa1g01747 475 Pfam SET domain 50 274 IPR001214 GO:0005515
Vifa1g01747 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 284 397 IPR036464 -
Vifa1g01747 475 Pfam Rubisco LSMT substrate-binding 322 459 IPR015353 -
Vifa1g01747 475 Gene3D - 304 473 IPR036464 -
Vifa1g01747 475 Gene3D set domain protein methyltransferase, domain 1 4 288 - -
Vifa1g01747 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01747 Vifa-Chr1 284859239 284862616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01747 50 245 NAC Transcription Factor Family AT3G56570 25.000 4.09e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g01747 SET 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01747 - - psat:127118328 892.493