Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01746 ATGGAGCCATGCAACGAAGAGTCTGACGAGAGCGTCGATTCCACAAAAGAAGTTAGTATGAAGAACTCACGCGCATTTGATTGTTGCATTTGTCTTCAACTCTTGACCATTCCCGTTTTTCAGTGTAGAAATGGTCATATTGTTTGCTCAACTTGCTGTGATAAACTCGGGAACAAGTGTGACAAATGCTCAAAACAAGTTAGCTTAACACGTTGTAAAGAATATGAGGATCTAATGCAATCTATCAAGTTGCCATGTCCGAATGAAAAATACGGTTGCAGGGAGACAATTCGTTACAGTGGAAAGAGGAAGCATGGAGAAGAATGCATCTATGTGCCATGTTACTGTCCCCTTTCAGGTTGTGATTTGGTTGCCTCAATAGAAGTGTTGTCGAACCATTTCAACCATGAACACTGTGATTCTTTAATCGAATTTTCTTATGGTCACCCCTTCATTGTCTTCTTGAAGTCTAGTGACGTAACCGTGGTTCTCCAAGAGGAAAATGATGGCAGACTATACACTCTCAATAATAGTACTATAACGAGTATAGGAAATGCAGTCAATATTAGCTGCATTGATCCTAACTCTTCTTCTGAGGCTGGACATAGTTATGATATATCGGCTAAGTCTAAGTTTGGCATGCTGAAGTTACATTCTTTTCCTAAGAATGTCCAACAGGCTACTTTAGCAACTCAATCATCAGCGTTCCTTCTGATTCCATTGGGTTATTTTAGTTCTTCTGAACCTCTCAAGCTAGAAATTTGCATAACCCCCAAGACTTCTGTTGCAGATAGATGCAATGACTCCTGTAGTATAGTGTTAATATTGCAGATAGGTGCAATGACTCCTGAGATATAG 858 0.3986 MEPCNEESDESVDSTKEVSMKNSRAFDCCICLQLLTIPVFQCRNGHIVCSTCCDKLGNKCDKCSKQVSLTRCKEYEDLMQSIKLPCPNEKYGCRETIRYSGKRKHGEECIYVPCYCPLSGCDLVASIEVLSNHFNHEHCDSLIEFSYGHPFIVFLKSSDVTVVLQEENDGRLYTLNNSTITSIGNAVNISCIDPNSSSEAGHSYDISAKSKFGMLKLHSFPKNVQQATLATQSSAFLLIPLGYFSSSEPLKLEICITPKTSVADRCNDSCSIVLILQIGAMTPEI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01746 285 SUPERFAMILY TRAF domain-like 81 257 - -
Vifa1g01746 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 17 257 IPR044286 -
Vifa1g01746 285 CDD RING-HC_SIAHs 26 64 - -
Vifa1g01746 285 Pfam Seven in absentia protein family 72 142 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa1g01746 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 134 IPR013083 -
Vifa1g01746 285 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01746 Vifa-Chr1 284824627 284831577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01746 26 259 C3H Transcription Factor Family AT2G41980 25.498 4.09e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01746 K04506 - mtr:11432566 335.495